Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33280 | 3' | -57.5 | NC_007605.1 | + | 31390 | 0.74 | 0.451031 |
Target: 5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3' miRNA: 3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 34420 | 0.76 | 0.328257 |
Target: 5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3' miRNA: 3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 85235 | 0.76 | 0.356129 |
Target: 5'- uCCUCAGGUG-CCGCccguuccccggcagAGGCCUCGGgggGCg -3' miRNA: 3'- -GGAGUCCACaGGUG--------------UCCGGGGUCa--UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 12976 | 0.74 | 0.451031 |
Target: 5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3' miRNA: 3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 16045 | 0.74 | 0.451031 |
Target: 5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3' miRNA: 3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 19114 | 0.74 | 0.451031 |
Target: 5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3' miRNA: 3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 22183 | 0.74 | 0.451031 |
Target: 5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3' miRNA: 3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 25252 | 0.74 | 0.451031 |
Target: 5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3' miRNA: 3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 28321 | 0.74 | 0.451031 |
Target: 5'- aCCUCAgGGUGccUCCcCGGGUCCCAGgcCa -3' miRNA: 3'- -GGAGU-CCAC--AGGuGUCCGGGGUCauG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 31351 | 0.76 | 0.328257 |
Target: 5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3' miRNA: 3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 28282 | 0.76 | 0.328257 |
Target: 5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3' miRNA: 3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 25213 | 0.76 | 0.328257 |
Target: 5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3' miRNA: 3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 170639 | 0.77 | 0.293209 |
Target: 5'- -gUCGGG-GUCCGCGGGCUCCGGgGCu -3' miRNA: 3'- ggAGUCCaCAGGUGUCCGGGGUCaUG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 169579 | 0.77 | 0.299978 |
Target: 5'- -gUCGGG-GUCCGCGGGCUCCGGggGCu -3' miRNA: 3'- ggAGUCCaCAGGUGUCCGGGGUCa-UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 170116 | 0.77 | 0.299978 |
Target: 5'- -gUCGGG-GUCCGCGGGCUCCGGggGCu -3' miRNA: 3'- ggAGUCCaCAGGUGUCCGGGGUCa-UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 171176 | 0.77 | 0.299978 |
Target: 5'- -gUCGGG-GUCCGCGGGCUCCGGggGCu -3' miRNA: 3'- ggAGUCCaCAGGUGUCCGGGGUCa-UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 12938 | 0.76 | 0.328257 |
Target: 5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3' miRNA: 3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 16006 | 0.76 | 0.328257 |
Target: 5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3' miRNA: 3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 19075 | 0.76 | 0.328257 |
Target: 5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3' miRNA: 3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 22144 | 0.76 | 0.328257 |
Target: 5'- cCCUCGGGg--CC-CAGGCCCCAGa-- -3' miRNA: 3'- -GGAGUCCacaGGuGUCCGGGGUCaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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