Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33280 | 3' | -57.5 | NC_007605.1 | + | 42017 | 1.12 | 0.001541 |
Target: 5'- cCCUCAGGUGUCCACAGGCCCCAGUACg -3' miRNA: 3'- -GGAGUCCACAGGUGUCCGGGGUCAUG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 171732 | 0.66 | 0.878829 |
Target: 5'- -gUCAGG-GUugccugugucacCCACGGGCCCCuuGGUcACg -3' miRNA: 3'- ggAGUCCaCA------------GGUGUCCGGGG--UCA-UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 170672 | 0.66 | 0.878829 |
Target: 5'- -gUCAGG-GUugccugugucacCCACGGGCCCCuuGGUcACg -3' miRNA: 3'- ggAGUCCaCA------------GGUGUCCGGGG--UCA-UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 170134 | 0.66 | 0.878829 |
Target: 5'- -gUCAGG-GUugccugugucacCCACGGGCCCCuuGGUcACg -3' miRNA: 3'- ggAGUCCaCA------------GGUGUCCGGGG--UCA-UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 24796 | 0.76 | 0.35073 |
Target: 5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3' miRNA: 3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 21727 | 0.76 | 0.35073 |
Target: 5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3' miRNA: 3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 15589 | 0.76 | 0.35073 |
Target: 5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3' miRNA: 3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 12520 | 0.76 | 0.35073 |
Target: 5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3' miRNA: 3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 126350 | 0.7 | 0.635214 |
Target: 5'- cCCggGGGUGUCCAaacGGUCCCAGa-- -3' miRNA: 3'- -GGagUCCACAGGUgu-CCGGGGUCaug -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 127521 | 0.67 | 0.841305 |
Target: 5'- cCCgauggCAGGUGcacggCCccgugaaugaaGCGGGCCCCGGgcUGCu -3' miRNA: 3'- -GGa----GUCCACa----GG-----------UGUCCGGGGUC--AUG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 61491 | 0.68 | 0.80272 |
Target: 5'- uCCUCAGGUcucugcuauggGUCCgcuacagccgccuguGgCAGGCCCCGGccccgGCu -3' miRNA: 3'- -GGAGUCCA-----------CAGG---------------U-GUCCGGGGUCa----UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 81387 | 0.71 | 0.584028 |
Target: 5'- gCCU-AGGUGUgccauaagugcucCCACGGGCCuuuuCCAGUACc -3' miRNA: 3'- -GGAgUCCACA-------------GGUGUCCGG----GGUCAUG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 34003 | 0.76 | 0.35073 |
Target: 5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3' miRNA: 3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 98340 | 0.67 | 0.805341 |
Target: 5'- uCCUCuGGGUagacgguggccugaGUCCGCAGGCgUCGG-ACa -3' miRNA: 3'- -GGAG-UCCA--------------CAGGUGUCCGgGGUCaUG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 30934 | 0.76 | 0.35073 |
Target: 5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3' miRNA: 3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 105074 | 0.72 | 0.525936 |
Target: 5'- aUUCGGGUGaaggcucgaCGCGGGCCCgGGUGCc -3' miRNA: 3'- gGAGUCCACag-------GUGUCCGGGgUCAUG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 163392 | 0.67 | 0.833224 |
Target: 5'- -gUgAGG-GUCCAgAGGCCCguGUGg -3' miRNA: 3'- ggAgUCCaCAGGUgUCCGGGguCAUg -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 171194 | 0.66 | 0.878829 |
Target: 5'- -gUCAGG-GUugccugugucacCCACGGGCCCCuuGGUcACg -3' miRNA: 3'- ggAGUCCaCA------------GGUGUCCGGGG--UCA-UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 27865 | 0.76 | 0.35073 |
Target: 5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3' miRNA: 3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 18658 | 0.76 | 0.35073 |
Target: 5'- aCCUCGGGUGcCCGCuGGCUCCAa--- -3' miRNA: 3'- -GGAGUCCACaGGUGuCCGGGGUcaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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