Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33280 | 3' | -57.5 | NC_007605.1 | + | 171732 | 0.66 | 0.878829 |
Target: 5'- -gUCAGG-GUugccugugucacCCACGGGCCCCuuGGUcACg -3' miRNA: 3'- ggAGUCCaCA------------GGUGUCCGGGG--UCA-UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 171194 | 0.66 | 0.878829 |
Target: 5'- -gUCAGG-GUugccugugucacCCACGGGCCCCuuGGUcACg -3' miRNA: 3'- ggAGUCCaCA------------GGUGUCCGGGG--UCA-UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 171176 | 0.77 | 0.299978 |
Target: 5'- -gUCGGG-GUCCGCGGGCUCCGGggGCu -3' miRNA: 3'- ggAGUCCaCAGGUGUCCGGGGUCa-UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 170672 | 0.66 | 0.878829 |
Target: 5'- -gUCAGG-GUugccugugucacCCACGGGCCCCuuGGUcACg -3' miRNA: 3'- ggAGUCCaCA------------GGUGUCCGGGG--UCA-UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 170639 | 0.77 | 0.293209 |
Target: 5'- -gUCGGG-GUCCGCGGGCUCCGGgGCu -3' miRNA: 3'- ggAGUCCaCAGGUGUCCGGGGUCaUG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 170134 | 0.66 | 0.878829 |
Target: 5'- -gUCAGG-GUugccugugucacCCACGGGCCCCuuGGUcACg -3' miRNA: 3'- ggAGUCCaCA------------GGUGUCCGGGG--UCA-UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 170116 | 0.77 | 0.299978 |
Target: 5'- -gUCGGG-GUCCGCGGGCUCCGGggGCu -3' miRNA: 3'- ggAGUCCaCAGGUGUCCGGGGUCa-UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 169579 | 0.77 | 0.299978 |
Target: 5'- -gUCGGG-GUCCGCGGGCUCCGGggGCu -3' miRNA: 3'- ggAGUCCaCAGGUGUCCGGGGUCa-UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 163392 | 0.67 | 0.833224 |
Target: 5'- -gUgAGG-GUCCAgAGGCCCguGUGg -3' miRNA: 3'- ggAgUCCaCAGGUgUCCGGGguCAUg -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 153895 | 0.69 | 0.743972 |
Target: 5'- cCCUCGGG-GUUgAgGGGCgCCCAG-GCg -3' miRNA: 3'- -GGAGUCCaCAGgUgUCCG-GGGUCaUG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 138697 | 0.7 | 0.645274 |
Target: 5'- cCCUCcgcGGUGUCCGguGGUCCuCAacGUGCc -3' miRNA: 3'- -GGAGu--CCACAGGUguCCGGG-GU--CAUG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 138497 | 0.66 | 0.85691 |
Target: 5'- uCCUCAGGUGgCUuUAGGCCUaauGUAg -3' miRNA: 3'- -GGAGUCCACaGGuGUCCGGGgu-CAUg -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 127521 | 0.67 | 0.841305 |
Target: 5'- cCCgauggCAGGUGcacggCCccgugaaugaaGCGGGCCCCGGgcUGCu -3' miRNA: 3'- -GGa----GUCCACa----GG-----------UGUCCGGGGUC--AUG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 126350 | 0.7 | 0.635214 |
Target: 5'- cCCggGGGUGUCCAaacGGUCCCAGa-- -3' miRNA: 3'- -GGagUCCACAGGUgu-CCGGGGUCaug -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 121566 | 0.69 | 0.705142 |
Target: 5'- aCCUgcCAGGUauGUCCugGGGUCCCGaaGCa -3' miRNA: 3'- -GGA--GUCCA--CAGGugUCCGGGGUcaUG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 121327 | 0.66 | 0.878829 |
Target: 5'- gCC-CAGGgaUUCACAGuGCUCCGGUAUu -3' miRNA: 3'- -GGaGUCCacAGGUGUC-CGGGGUCAUG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 113797 | 0.71 | 0.625152 |
Target: 5'- gCCacgCAGGaUGUUCACguGGGCCCCGGcACc -3' miRNA: 3'- -GGa--GUCC-ACAGGUG--UCCGGGGUCaUG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 112434 | 0.82 | 0.152793 |
Target: 5'- gCUCGGGcgUGUCCugGCAGGCCuCCAGUGCc -3' miRNA: 3'- gGAGUCC--ACAGG--UGUCCGG-GGUCAUG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 107404 | 0.66 | 0.885718 |
Target: 5'- gCUCAGcGUGUUC-CuGGCCCUGGgcaACa -3' miRNA: 3'- gGAGUC-CACAGGuGuCCGGGGUCa--UG- -5' |
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33280 | 3' | -57.5 | NC_007605.1 | + | 105074 | 0.72 | 0.525936 |
Target: 5'- aUUCGGGUGaaggcucgaCGCGGGCCCgGGUGCc -3' miRNA: 3'- gGAGUCCACag-------GUGUCCGGGgUCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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