miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33280 5' -46.6 NC_007605.1 + 117471 0.67 0.999916
Target:  5'- aGGGAGG-AGGCUaGGCGuccGGCuACUcGGGGg -3'
miRNA:   3'- -CCCUUUaUUCGA-CCGU---UUG-UGA-CUCC- -5'
33280 5' -46.6 NC_007605.1 + 137594 0.67 0.999911
Target:  5'- uGGGAGAcuaaugugguggGGGCuaUGGUAGugGCUGGGa -3'
miRNA:   3'- -CCCUUUa-----------UUCG--ACCGUUugUGACUCc -5'
33280 5' -46.6 NC_007605.1 + 115567 0.67 0.99989
Target:  5'- aGGGGAGcagAGGUUGGgccACGCUGGGa -3'
miRNA:   3'- -CCCUUUa--UUCGACCguuUGUGACUCc -5'
33280 5' -46.6 NC_007605.1 + 36688 0.67 0.99989
Target:  5'- -aGAGGUGauGGCUcuuguguccaGGCAucccuGCGCUGAGGu -3'
miRNA:   3'- ccCUUUAU--UCGA----------CCGUu----UGUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 170251 0.67 0.99989
Target:  5'- cGGGG---GGGCUGGgGGGcCGCgGGGGa -3'
miRNA:   3'- -CCCUuuaUUCGACCgUUU-GUGaCUCC- -5'
33280 5' -46.6 NC_007605.1 + 169714 0.67 0.99989
Target:  5'- cGGGG---GGGCUGGgGGGcCGCgGGGGa -3'
miRNA:   3'- -CCCUuuaUUCGACCgUUU-GUGaCUCC- -5'
33280 5' -46.6 NC_007605.1 + 170774 0.67 0.99989
Target:  5'- cGGGG---GGGCUGGgGGGcCGCgGGGGa -3'
miRNA:   3'- -CCCUuuaUUCGACCgUUU-GUGaCUCC- -5'
33280 5' -46.6 NC_007605.1 + 171311 0.67 0.99989
Target:  5'- cGGGG---GGGCUGGgGGGcCGCgGGGGa -3'
miRNA:   3'- -CCCUuuaUUCGACCgUUU-GUGaCUCC- -5'
33280 5' -46.6 NC_007605.1 + 22138 0.67 0.999884
Target:  5'- cGGGGccGGUcGGCUGGCuGGCcgagacccggguCUGGGGg -3'
miRNA:   3'- -CCCU--UUAuUCGACCGuUUGu-----------GACUCC- -5'
33280 5' -46.6 NC_007605.1 + 33583 0.67 0.99988
Target:  5'- cGGGGAcgGAGggGGCcugAAGCccggggacuagggaACUGAGGa -3'
miRNA:   3'- -CCCUUuaUUCgaCCG---UUUG--------------UGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 30514 0.67 0.99988
Target:  5'- cGGGGAcgGAGggGGCcugAAGCccggggacuagggaACUGAGGa -3'
miRNA:   3'- -CCCUUuaUUCgaCCG---UUUG--------------UGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 21307 0.67 0.99988
Target:  5'- cGGGGAcgGAGggGGCcugAAGCccggggacuagggaACUGAGGa -3'
miRNA:   3'- -CCCUUuaUUCgaCCG---UUUG--------------UGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 27445 0.67 0.99988
Target:  5'- cGGGGAcgGAGggGGCcugAAGCccggggacuagggaACUGAGGa -3'
miRNA:   3'- -CCCUUuaUUCgaCCG---UUUG--------------UGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 18238 0.67 0.99988
Target:  5'- cGGGGAcgGAGggGGCcugAAGCccggggacuagggaACUGAGGa -3'
miRNA:   3'- -CCCUUuaUUCgaCCG---UUUG--------------UGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 24376 0.67 0.99988
Target:  5'- cGGGGAcgGAGggGGCcugAAGCccggggacuagggaACUGAGGa -3'
miRNA:   3'- -CCCUUuaUUCgaCCG---UUUG--------------UGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 95386 0.67 0.999856
Target:  5'- cGGAAGaaAAGCUGGguGcggcCugUGAGGa -3'
miRNA:   3'- cCCUUUa-UUCGACCguUu---GugACUCC- -5'
33280 5' -46.6 NC_007605.1 + 15169 0.67 0.999852
Target:  5'- cGGGGAcgGAGggGGCcugAAGCccggggacugggaACUGAGGa -3'
miRNA:   3'- -CCCUUuaUUCgaCCG---UUUG-------------UGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 130226 0.67 0.999832
Target:  5'- aGGGAGAUGAGCauguguugagccUGGUcuuuggcaAGACGaaggaccugccggauCUGAGGg -3'
miRNA:   3'- -CCCUUUAUUCG------------ACCG--------UUUGU---------------GACUCC- -5'
33280 5' -46.6 NC_007605.1 + 63082 0.67 0.999814
Target:  5'- gGGGAGGUGgcggucgccggGGgUGGCAGugGaggGGGGa -3'
miRNA:   3'- -CCCUUUAU-----------UCgACCGUUugUga-CUCC- -5'
33280 5' -46.6 NC_007605.1 + 97442 0.67 0.999814
Target:  5'- cGGAGAUGaAGgaGGUGAugGagaUGAGGg -3'
miRNA:   3'- cCCUUUAU-UCgaCCGUUugUg--ACUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.