miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33280 5' -46.6 NC_007605.1 + 13192 0.66 0.999964
Target:  5'- cGGGGucccuccGGCUGGCcugggacccggggAGGCACccUGAGGu -3'
miRNA:   3'- -CCCUuuau---UCGACCG-------------UUUGUG--ACUCC- -5'
33280 5' -46.6 NC_007605.1 + 28537 0.66 0.999964
Target:  5'- cGGGGucccuccGGCUGGCcugggacccggggAGGCACccUGAGGu -3'
miRNA:   3'- -CCCUuuau---UCGACCG-------------UUUGUG--ACUCC- -5'
33280 5' -46.6 NC_007605.1 + 34675 0.66 0.999964
Target:  5'- cGGGGucccuccGGCUGGCcugggacccggggAGGCACccUGAGGu -3'
miRNA:   3'- -CCCUuuau---UCGACCG-------------UUUGUG--ACUCC- -5'
33280 5' -46.6 NC_007605.1 + 162718 0.66 0.999964
Target:  5'- uGGAGcgGcugucucGGCUgGGCAuaGACGCUGaAGGa -3'
miRNA:   3'- cCCUUuaU-------UCGA-CCGU--UUGUGAC-UCC- -5'
33280 5' -46.6 NC_007605.1 + 25468 0.66 0.999964
Target:  5'- cGGGGucccuccGGCUGGCcugggacccggggAGGCACccUGAGGu -3'
miRNA:   3'- -CCCUuuau---UCGACCG-------------UUUGUG--ACUCC- -5'
33280 5' -46.6 NC_007605.1 + 22399 0.66 0.999964
Target:  5'- cGGGGucccuccGGCUGGCcugggacccggggAGGCACccUGAGGu -3'
miRNA:   3'- -CCCUuuau---UCGACCG-------------UUUGUG--ACUCC- -5'
33280 5' -46.6 NC_007605.1 + 31606 0.66 0.999964
Target:  5'- cGGGGucccuccGGCUGGCcugggacccggggAGGCACccUGAGGu -3'
miRNA:   3'- -CCCUuuau---UCGACCG-------------UUUGUG--ACUCC- -5'
33280 5' -46.6 NC_007605.1 + 2802 0.66 0.999959
Target:  5'- aGGGAAAgaggccgggguGCUGGCGucucauaAACAgCUGuGGg -3'
miRNA:   3'- -CCCUUUauu--------CGACCGU-------UUGU-GACuCC- -5'
33280 5' -46.6 NC_007605.1 + 52836 0.66 0.999951
Target:  5'- cGGGAGAUGAuggcgcuGCUGGUcgGCACa---- -3'
miRNA:   3'- -CCCUUUAUU-------CGACCGuuUGUGacucc -5'
33280 5' -46.6 NC_007605.1 + 37267 0.66 0.999948
Target:  5'- uGGAGGUGGcuguGCUGGUGcugcuggugguggcAAUugUGAGGg -3'
miRNA:   3'- cCCUUUAUU----CGACCGU--------------UUGugACUCC- -5'
33280 5' -46.6 NC_007605.1 + 126438 0.66 0.999937
Target:  5'- cGGGAAGcuuggAAGCUGGaauCGAGCGggggugGAGGg -3'
miRNA:   3'- -CCCUUUa----UUCGACC---GUUUGUga----CUCC- -5'
33280 5' -46.6 NC_007605.1 + 78213 0.66 0.999937
Target:  5'- uGGGGug-GGGCUGGU-GGCAuUUGGGGu -3'
miRNA:   3'- -CCCUuuaUUCGACCGuUUGU-GACUCC- -5'
33280 5' -46.6 NC_007605.1 + 5131 0.66 0.999937
Target:  5'- uGGggGUGcaAGUuuUGGCuGGC-CUGGGGg -3'
miRNA:   3'- cCCuuUAU--UCG--ACCGuUUGuGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 57377 0.66 0.999937
Target:  5'- cGGGGu---AGCugaUGGCAGggGCugcuGCUGAGGa -3'
miRNA:   3'- -CCCUuuauUCG---ACCGUU--UG----UGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 78171 0.66 0.999937
Target:  5'- uGGGGug-GGGCUGGU-GGCAuUUGGGGu -3'
miRNA:   3'- -CCCUuuaUUCGACCGuUUGU-GACUCC- -5'
33280 5' -46.6 NC_007605.1 + 113893 0.66 0.999937
Target:  5'- uGGAAA--GGUUGGCA--UAUUGGGGc -3'
miRNA:   3'- cCCUUUauUCGACCGUuuGUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 157459 0.66 0.999937
Target:  5'- cGGAug-GGGCUGGgGgcgaugGACuGCUGGGGg -3'
miRNA:   3'- cCCUuuaUUCGACCgU------UUG-UGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 40094 0.67 0.999916
Target:  5'- uGGGugcGGUccGCUGGCcccACcCUGGGGg -3'
miRNA:   3'- -CCCu--UUAuuCGACCGuu-UGuGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 101830 0.67 0.999916
Target:  5'- cGGGAAcggcggGGGCUGGCAAgaGCACc---- -3'
miRNA:   3'- -CCCUUua----UUCGACCGUU--UGUGacucc -5'
33280 5' -46.6 NC_007605.1 + 78410 0.67 0.999916
Target:  5'- cGGug--AGGUUGGUAGGCACgUGAGu -3'
miRNA:   3'- cCCuuuaUUCGACCGUUUGUG-ACUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.