miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33280 5' -46.6 NC_007605.1 + 16740 0.74 0.971248
Target:  5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3'
miRNA:   3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5'
33280 5' -46.6 NC_007605.1 + 13671 0.74 0.971248
Target:  5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3'
miRNA:   3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5'
33280 5' -46.6 NC_007605.1 + 131202 0.73 0.979288
Target:  5'- aGGAGAgAAGCUGGCuccggagcAGCAUUaGAGGg -3'
miRNA:   3'- cCCUUUaUUCGACCGu-------UUGUGA-CUCC- -5'
33280 5' -46.6 NC_007605.1 + 19714 0.73 0.983632
Target:  5'- uGGAcccGGUGGGgaGGCAA--GCUGAGGg -3'
miRNA:   3'- cCCU---UUAUUCgaCCGUUugUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 13576 0.73 0.983632
Target:  5'- uGGAcccGGUGGGgaGGCAA--GCUGAGGg -3'
miRNA:   3'- cCCU---UUAUUCgaCCGUUugUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 16645 0.73 0.983632
Target:  5'- uGGAcccGGUGGGgaGGCAA--GCUGAGGg -3'
miRNA:   3'- cCCU---UUAUUCgaCCGUUugUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 22783 0.73 0.983632
Target:  5'- uGGAcccGGUGGGgaGGCAA--GCUGAGGg -3'
miRNA:   3'- cCCU---UUAUUCgaCCGUUugUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 35059 0.73 0.983632
Target:  5'- uGGAcccGGUGGGgaGGCAA--GCUGAGGg -3'
miRNA:   3'- cCCU---UUAUUCgaCCGUUugUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 31990 0.73 0.983632
Target:  5'- uGGAcccGGUGGGgaGGCAA--GCUGAGGg -3'
miRNA:   3'- cCCU---UUAUUCgaCCGUUugUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 28921 0.73 0.983632
Target:  5'- uGGAcccGGUGGGgaGGCAA--GCUGAGGg -3'
miRNA:   3'- cCCU---UUAUUCgaCCGUUugUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 25852 0.73 0.983632
Target:  5'- uGGAcccGGUGGGgaGGCAA--GCUGAGGg -3'
miRNA:   3'- cCCU---UUAUUCgaCCGUUugUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 50450 0.72 0.985526
Target:  5'- uGGggGUGGGCagGGCAGcuGCAUcuUGGGGc -3'
miRNA:   3'- cCCuuUAUUCGa-CCGUU--UGUG--ACUCC- -5'
33280 5' -46.6 NC_007605.1 + 111846 0.72 0.987248
Target:  5'- cGGGAGA--GGCagaaagauauaUGGUGGACGCUGuGGg -3'
miRNA:   3'- -CCCUUUauUCG-----------ACCGUUUGUGACuCC- -5'
33280 5' -46.6 NC_007605.1 + 129412 0.72 0.987248
Target:  5'- gGGGAGGUuuuGCgggGGCuAGCcCUGGGGa -3'
miRNA:   3'- -CCCUUUAuu-CGa--CCGuUUGuGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 15529 0.72 0.990214
Target:  5'- uGGGAGGUcuGGGgUGGCGAGCcuGCUGucucAGGa -3'
miRNA:   3'- -CCCUUUA--UUCgACCGUUUG--UGAC----UCC- -5'
33280 5' -46.6 NC_007605.1 + 18598 0.72 0.990214
Target:  5'- uGGGAGGUcuGGGgUGGCGAGCcuGCUGucucAGGa -3'
miRNA:   3'- -CCCUUUA--UUCgACCGUUUG--UGAC----UCC- -5'
33280 5' -46.6 NC_007605.1 + 21667 0.72 0.990214
Target:  5'- uGGGAGGUcuGGGgUGGCGAGCcuGCUGucucAGGa -3'
miRNA:   3'- -CCCUUUA--UUCgACCGUUUG--UGAC----UCC- -5'
33280 5' -46.6 NC_007605.1 + 30874 0.72 0.990214
Target:  5'- uGGGAGGUcuGGGgUGGCGAGCcuGCUGucucAGGa -3'
miRNA:   3'- -CCCUUUA--UUCgACCGUUUG--UGAC----UCC- -5'
33280 5' -46.6 NC_007605.1 + 27805 0.72 0.990214
Target:  5'- uGGGAGGUcuGGGgUGGCGAGCcuGCUGucucAGGa -3'
miRNA:   3'- -CCCUUUA--UUCgACCGUUUG--UGAC----UCC- -5'
33280 5' -46.6 NC_007605.1 + 24736 0.72 0.990214
Target:  5'- uGGGAGGUcuGGGgUGGCGAGCcuGCUGucucAGGa -3'
miRNA:   3'- -CCCUUUA--UUCgACCGUUUG--UGAC----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.