miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33280 5' -46.6 NC_007605.1 + 41981 1.16 0.010954
Target:  5'- gGGGAAAUAAGCUGGCAAACACUGAGGg -3'
miRNA:   3'- -CCCUUUAUUCGACCGUUUGUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 3894 0.96 0.156865
Target:  5'- aGGGAAccAGGCUGGCAAugGCUGAGGc -3'
miRNA:   3'- -CCCUUuaUUCGACCGUUugUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 108089 0.78 0.852146
Target:  5'- aGGGGAGUGGGCUaGGUGccGACACcGGGGu -3'
miRNA:   3'- -CCCUUUAUUCGA-CCGU--UUGUGaCUCC- -5'
33280 5' -46.6 NC_007605.1 + 55082 0.77 0.883591
Target:  5'- aGGAGAggcagGAGC-GGCGAGCGCgGAGGc -3'
miRNA:   3'- cCCUUUa----UUCGaCCGUUUGUGaCUCC- -5'
33280 5' -46.6 NC_007605.1 + 65555 0.77 0.897838
Target:  5'- cGGAccUGGGCUGGCAGuACACUGAc- -3'
miRNA:   3'- cCCUuuAUUCGACCGUU-UGUGACUcc -5'
33280 5' -46.6 NC_007605.1 + 75516 0.77 0.897838
Target:  5'- uGGGugauAGUGGGCUGaGCGAGgCGCUcGAGGg -3'
miRNA:   3'- -CCCu---UUAUUCGAC-CGUUU-GUGA-CUCC- -5'
33280 5' -46.6 NC_007605.1 + 133520 0.77 0.904574
Target:  5'- gGGGAGGgcgGGGCUGGCGcagAGCGCccucccgugGAGGg -3'
miRNA:   3'- -CCCUUUa--UUCGACCGU---UUGUGa--------CUCC- -5'
33280 5' -46.6 NC_007605.1 + 137576 0.76 0.917257
Target:  5'- uGGGGu---GGCUGGCGG--GCUGGGGg -3'
miRNA:   3'- -CCCUuuauUCGACCGUUugUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 60637 0.75 0.939417
Target:  5'- aGGGAGGUGGGCcaGGCAAGCGgUGGu- -3'
miRNA:   3'- -CCCUUUAUUCGa-CCGUUUGUgACUcc -5'
33280 5' -46.6 NC_007605.1 + 171595 0.74 0.961179
Target:  5'- cGGGggGgguGUUGGCGGGgGCaUGGGGg -3'
miRNA:   3'- -CCCuuUauuCGACCGUUUgUG-ACUCC- -5'
33280 5' -46.6 NC_007605.1 + 155611 0.74 0.964773
Target:  5'- -cGAAGgu-GCUGGCcuugaGGGCGCUGAGGa -3'
miRNA:   3'- ccCUUUauuCGACCG-----UUUGUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 135797 0.74 0.968127
Target:  5'- aGGGcuucuucaGAggGAGCUGGCucuuGACGgUGAGGg -3'
miRNA:   3'- -CCC--------UUuaUUCGACCGu---UUGUgACUCC- -5'
33280 5' -46.6 NC_007605.1 + 100390 0.74 0.968127
Target:  5'- uGGGAug-GAGCUgGGCGAACugccGCUGgAGGu -3'
miRNA:   3'- -CCCUuuaUUCGA-CCGUUUG----UGAC-UCC- -5'
33280 5' -46.6 NC_007605.1 + 148492 0.74 0.968127
Target:  5'- uGGGggGUGuGGUaUGGCAcAgGCUGGGGg -3'
miRNA:   3'- -CCCuuUAU-UCG-ACCGUuUgUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 29016 0.74 0.971248
Target:  5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3'
miRNA:   3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5'
33280 5' -46.6 NC_007605.1 + 25947 0.74 0.971248
Target:  5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3'
miRNA:   3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5'
33280 5' -46.6 NC_007605.1 + 22878 0.74 0.971248
Target:  5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3'
miRNA:   3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5'
33280 5' -46.6 NC_007605.1 + 35153 0.74 0.971248
Target:  5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3'
miRNA:   3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5'
33280 5' -46.6 NC_007605.1 + 19809 0.74 0.971248
Target:  5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3'
miRNA:   3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5'
33280 5' -46.6 NC_007605.1 + 32085 0.74 0.971248
Target:  5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3'
miRNA:   3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.