miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33280 5' -46.6 NC_007605.1 + 61228 0.7 0.996609
Target:  5'- cGGGGAGUAGGgggGGCuuACAgggGAGGg -3'
miRNA:   3'- -CCCUUUAUUCga-CCGuuUGUga-CUCC- -5'
33280 5' -46.6 NC_007605.1 + 21667 0.72 0.990214
Target:  5'- uGGGAGGUcuGGGgUGGCGAGCcuGCUGucucAGGa -3'
miRNA:   3'- -CCCUUUA--UUCgACCGUUUG--UGAC----UCC- -5'
33280 5' -46.6 NC_007605.1 + 24736 0.72 0.990214
Target:  5'- uGGGAGGUcuGGGgUGGCGAGCcuGCUGucucAGGa -3'
miRNA:   3'- -CCCUUUA--UUCgACCGUUUG--UGAC----UCC- -5'
33280 5' -46.6 NC_007605.1 + 27805 0.72 0.990214
Target:  5'- uGGGAGGUcuGGGgUGGCGAGCcuGCUGucucAGGa -3'
miRNA:   3'- -CCCUUUA--UUCgACCGUUUG--UGAC----UCC- -5'
33280 5' -46.6 NC_007605.1 + 30874 0.72 0.990214
Target:  5'- uGGGAGGUcuGGGgUGGCGAGCcuGCUGucucAGGa -3'
miRNA:   3'- -CCCUUUA--UUCgACCGUUUG--UGAC----UCC- -5'
33280 5' -46.6 NC_007605.1 + 33942 0.72 0.990214
Target:  5'- uGGGAGGUcuGGGgUGGCGAGCcuGCUGucucAGGa -3'
miRNA:   3'- -CCCUUUA--UUCgACCGUUUG--UGAC----UCC- -5'
33280 5' -46.6 NC_007605.1 + 109494 0.72 0.991479
Target:  5'- uGGAGAUggGAGCUGGCucAAACACcuugGuGGg -3'
miRNA:   3'- cCCUUUA--UUCGACCG--UUUGUGa---CuCC- -5'
33280 5' -46.6 NC_007605.1 + 169268 0.71 0.993619
Target:  5'- aGGGggGUucAGGUgaGGCAAGgCugUGGGGu -3'
miRNA:   3'- -CCCuuUA--UUCGa-CCGUUU-GugACUCC- -5'
33280 5' -46.6 NC_007605.1 + 44201 0.71 0.996
Target:  5'- aGGGAGAcAGGCgaaGGC-AGCGCccgGGGGa -3'
miRNA:   3'- -CCCUUUaUUCGa--CCGuUUGUGa--CUCC- -5'
33280 5' -46.6 NC_007605.1 + 18598 0.72 0.990214
Target:  5'- uGGGAGGUcuGGGgUGGCGAGCcuGCUGucucAGGa -3'
miRNA:   3'- -CCCUUUA--UUCgACCGUUUG--UGAC----UCC- -5'
33280 5' -46.6 NC_007605.1 + 15529 0.72 0.990214
Target:  5'- uGGGAGGUcuGGGgUGGCGAGCcuGCUGucucAGGa -3'
miRNA:   3'- -CCCUUUA--UUCgACCGUUUG--UGAC----UCC- -5'
33280 5' -46.6 NC_007605.1 + 12460 0.72 0.990214
Target:  5'- uGGGAGGUcuGGGgUGGCGAGCcuGCUGucucAGGa -3'
miRNA:   3'- -CCCUUUA--UUCgACCGUUUG--UGAC----UCC- -5'
33280 5' -46.6 NC_007605.1 + 108089 0.78 0.852146
Target:  5'- aGGGGAGUGGGCUaGGUGccGACACcGGGGu -3'
miRNA:   3'- -CCCUUUAUUCGA-CCGU--UUGUGaCUCC- -5'
33280 5' -46.6 NC_007605.1 + 65555 0.77 0.897838
Target:  5'- cGGAccUGGGCUGGCAGuACACUGAc- -3'
miRNA:   3'- cCCUuuAUUCGACCGUU-UGUGACUcc -5'
33280 5' -46.6 NC_007605.1 + 60637 0.75 0.939417
Target:  5'- aGGGAGGUGGGCcaGGCAAGCGgUGGu- -3'
miRNA:   3'- -CCCUUUAUUCGa-CCGUUUGUgACUcc -5'
33280 5' -46.6 NC_007605.1 + 171595 0.74 0.961179
Target:  5'- cGGGggGgguGUUGGCGGGgGCaUGGGGg -3'
miRNA:   3'- -CCCuuUauuCGACCGUUUgUG-ACUCC- -5'
33280 5' -46.6 NC_007605.1 + 155611 0.74 0.964773
Target:  5'- -cGAAGgu-GCUGGCcuugaGGGCGCUGAGGa -3'
miRNA:   3'- ccCUUUauuCGACCG-----UUUGUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 148492 0.74 0.968127
Target:  5'- uGGGggGUGuGGUaUGGCAcAgGCUGGGGg -3'
miRNA:   3'- -CCCuuUAU-UCG-ACCGUuUgUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 131202 0.73 0.979288
Target:  5'- aGGAGAgAAGCUGGCuccggagcAGCAUUaGAGGg -3'
miRNA:   3'- cCCUUUaUUCGACCGu-------UUGUGA-CUCC- -5'
33280 5' -46.6 NC_007605.1 + 50450 0.72 0.985526
Target:  5'- uGGggGUGGGCagGGCAGcuGCAUcuUGGGGc -3'
miRNA:   3'- cCCuuUAUUCGa-CCGUU--UGUG--ACUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.