Results 1 - 20 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33280 | 5' | -46.6 | NC_007605.1 | + | 41981 | 1.16 | 0.010954 |
Target: 5'- gGGGAAAUAAGCUGGCAAACACUGAGGg -3' miRNA: 3'- -CCCUUUAUUCGACCGUUUGUGACUCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 28921 | 0.73 | 0.983632 |
Target: 5'- uGGAcccGGUGGGgaGGCAA--GCUGAGGg -3' miRNA: 3'- cCCU---UUAUUCgaCCGUUugUGACUCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 22783 | 0.73 | 0.983632 |
Target: 5'- uGGAcccGGUGGGgaGGCAA--GCUGAGGg -3' miRNA: 3'- cCCU---UUAUUCgaCCGUUugUGACUCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 164220 | 0.66 | 0.999981 |
Target: 5'- aGGGAGG-----UGGCc-ACACUGGGGa -3' miRNA: 3'- -CCCUUUauucgACCGuuUGUGACUCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 137576 | 0.76 | 0.917257 |
Target: 5'- uGGGGu---GGCUGGCGG--GCUGGGGg -3' miRNA: 3'- -CCCUuuauUCGACCGUUugUGACUCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 135797 | 0.74 | 0.968127 |
Target: 5'- aGGGcuucuucaGAggGAGCUGGCucuuGACGgUGAGGg -3' miRNA: 3'- -CCC--------UUuaUUCGACCGu---UUGUgACUCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 35153 | 0.74 | 0.971248 |
Target: 5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3' miRNA: 3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 32085 | 0.74 | 0.971248 |
Target: 5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3' miRNA: 3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 22878 | 0.74 | 0.971248 |
Target: 5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3' miRNA: 3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 31990 | 0.73 | 0.983632 |
Target: 5'- uGGAcccGGUGGGgaGGCAA--GCUGAGGg -3' miRNA: 3'- cCCU---UUAUUCgaCCGUUugUGACUCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 16740 | 0.74 | 0.971248 |
Target: 5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3' miRNA: 3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 25947 | 0.74 | 0.971248 |
Target: 5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3' miRNA: 3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 55082 | 0.77 | 0.883591 |
Target: 5'- aGGAGAggcagGAGC-GGCGAGCGCgGAGGc -3' miRNA: 3'- cCCUUUa----UUCGaCCGUUUGUGaCUCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 13671 | 0.74 | 0.971248 |
Target: 5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3' miRNA: 3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 75516 | 0.77 | 0.897838 |
Target: 5'- uGGGugauAGUGGGCUGaGCGAGgCGCUcGAGGg -3' miRNA: 3'- -CCCu---UUAUUCGAC-CGUUU-GUGA-CUCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 29016 | 0.74 | 0.971248 |
Target: 5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3' miRNA: 3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 35059 | 0.73 | 0.983632 |
Target: 5'- uGGAcccGGUGGGgaGGCAA--GCUGAGGg -3' miRNA: 3'- cCCU---UUAUUCgaCCGUUugUGACUCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 25852 | 0.73 | 0.983632 |
Target: 5'- uGGAcccGGUGGGgaGGCAA--GCUGAGGg -3' miRNA: 3'- cCCU---UUAUUCgaCCGUUugUGACUCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 133520 | 0.77 | 0.904574 |
Target: 5'- gGGGAGGgcgGGGCUGGCGcagAGCGCccucccgugGAGGg -3' miRNA: 3'- -CCCUUUa--UUCGACCGU---UUGUGa--------CUCC- -5' |
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33280 | 5' | -46.6 | NC_007605.1 | + | 100390 | 0.74 | 0.968127 |
Target: 5'- uGGGAug-GAGCUgGGCGAACugccGCUGgAGGu -3' miRNA: 3'- -CCCUuuaUUCGA-CCGUUUG----UGAC-UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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