miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33280 5' -46.6 NC_007605.1 + 2006 0.66 0.999981
Target:  5'- aGGAAAcggcGAGCagGGUGAACACUuGGGc -3'
miRNA:   3'- cCCUUUa---UUCGa-CCGUUUGUGAcUCC- -5'
33280 5' -46.6 NC_007605.1 + 2173 0.69 0.998871
Target:  5'- uGGAGAUGGGCaGGCAGuuugGCUucGAGGu -3'
miRNA:   3'- cCCUUUAUUCGaCCGUUug--UGA--CUCC- -5'
33280 5' -46.6 NC_007605.1 + 2802 0.66 0.999959
Target:  5'- aGGGAAAgaggccgggguGCUGGCGucucauaAACAgCUGuGGg -3'
miRNA:   3'- -CCCUUUauu--------CGACCGU-------UUGU-GACuCC- -5'
33280 5' -46.6 NC_007605.1 + 3894 0.96 0.156865
Target:  5'- aGGGAAccAGGCUGGCAAugGCUGAGGc -3'
miRNA:   3'- -CCCUUuaUUCGACCGUUugUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 5131 0.66 0.999937
Target:  5'- uGGggGUGcaAGUuuUGGCuGGC-CUGGGGg -3'
miRNA:   3'- cCCuuUAU--UCG--ACCGuUUGuGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 12266 0.7 0.997139
Target:  5'- aGGGggGgAGGCUGG-GGugGCagGAGGg -3'
miRNA:   3'- -CCCuuUaUUCGACCgUUugUGa-CUCC- -5'
33280 5' -46.6 NC_007605.1 + 12325 0.69 0.999252
Target:  5'- aGGGggGcAGGC-GGCcc-UACUGGGGa -3'
miRNA:   3'- -CCCuuUaUUCGaCCGuuuGUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 12460 0.72 0.990214
Target:  5'- uGGGAGGUcuGGGgUGGCGAGCcuGCUGucucAGGa -3'
miRNA:   3'- -CCCUUUA--UUCgACCGUUUG--UGAC----UCC- -5'
33280 5' -46.6 NC_007605.1 + 13192 0.66 0.999964
Target:  5'- cGGGGucccuccGGCUGGCcugggacccggggAGGCACccUGAGGu -3'
miRNA:   3'- -CCCUuuau---UCGACCG-------------UUUGUG--ACUCC- -5'
33280 5' -46.6 NC_007605.1 + 13576 0.73 0.983632
Target:  5'- uGGAcccGGUGGGgaGGCAA--GCUGAGGg -3'
miRNA:   3'- cCCU---UUAUUCgaCCGUUugUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 13671 0.74 0.971248
Target:  5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3'
miRNA:   3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5'
33280 5' -46.6 NC_007605.1 + 15169 0.67 0.999852
Target:  5'- cGGGGAcgGAGggGGCcugAAGCccggggacugggaACUGAGGa -3'
miRNA:   3'- -CCCUUuaUUCgaCCG---UUUG-------------UGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 15335 0.7 0.997139
Target:  5'- aGGGggGgAGGCUGG-GGugGCagGAGGg -3'
miRNA:   3'- -CCCuuUaUUCGACCgUUugUGa-CUCC- -5'
33280 5' -46.6 NC_007605.1 + 15394 0.69 0.999252
Target:  5'- aGGGggGcAGGC-GGCcc-UACUGGGGa -3'
miRNA:   3'- -CCCuuUaUUCGaCCGuuuGUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 15529 0.72 0.990214
Target:  5'- uGGGAGGUcuGGGgUGGCGAGCcuGCUGucucAGGa -3'
miRNA:   3'- -CCCUUUA--UUCgACCGUUUG--UGAC----UCC- -5'
33280 5' -46.6 NC_007605.1 + 16261 0.66 0.999964
Target:  5'- cGGGGucccuccGGCUGGCcugggacccggggAGGCACccUGAGGu -3'
miRNA:   3'- -CCCUuuau---UCGACCG-------------UUUGUG--ACUCC- -5'
33280 5' -46.6 NC_007605.1 + 16645 0.73 0.983632
Target:  5'- uGGAcccGGUGGGgaGGCAA--GCUGAGGg -3'
miRNA:   3'- cCCU---UUAUUCgaCCGUUugUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 16740 0.74 0.971248
Target:  5'- gGGGAGAaAAGCUGGCGcccuuGC-CUGgAGGc -3'
miRNA:   3'- -CCCUUUaUUCGACCGUu----UGuGAC-UCC- -5'
33280 5' -46.6 NC_007605.1 + 18238 0.67 0.99988
Target:  5'- cGGGGAcgGAGggGGCcugAAGCccggggacuagggaACUGAGGa -3'
miRNA:   3'- -CCCUUuaUUCgaCCG---UUUG--------------UGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 18404 0.7 0.997139
Target:  5'- aGGGggGgAGGCUGG-GGugGCagGAGGg -3'
miRNA:   3'- -CCCuuUaUUCGACCgUUugUGa-CUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.