miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33280 5' -46.6 NC_007605.1 + 171595 0.74 0.961179
Target:  5'- cGGGggGgguGUUGGCGGGgGCaUGGGGg -3'
miRNA:   3'- -CCCuuUauuCGACCGUUUgUG-ACUCC- -5'
33280 5' -46.6 NC_007605.1 + 171311 0.67 0.99989
Target:  5'- cGGGG---GGGCUGGgGGGcCGCgGGGGa -3'
miRNA:   3'- -CCCUuuaUUCGACCgUUU-GUGaCUCC- -5'
33280 5' -46.6 NC_007605.1 + 170774 0.67 0.99989
Target:  5'- cGGGG---GGGCUGGgGGGcCGCgGGGGa -3'
miRNA:   3'- -CCCUuuaUUCGACCgUUU-GUGaCUCC- -5'
33280 5' -46.6 NC_007605.1 + 170251 0.67 0.99989
Target:  5'- cGGGG---GGGCUGGgGGGcCGCgGGGGa -3'
miRNA:   3'- -CCCUuuaUUCGACCgUUU-GUGaCUCC- -5'
33280 5' -46.6 NC_007605.1 + 169714 0.67 0.99989
Target:  5'- cGGGG---GGGCUGGgGGGcCGCgGGGGa -3'
miRNA:   3'- -CCCUuuaUUCGACCgUUU-GUGaCUCC- -5'
33280 5' -46.6 NC_007605.1 + 169268 0.71 0.993619
Target:  5'- aGGGggGUucAGGUgaGGCAAGgCugUGGGGu -3'
miRNA:   3'- -CCCuuUA--UUCGa-CCGUUU-GugACUCC- -5'
33280 5' -46.6 NC_007605.1 + 169231 0.69 0.998335
Target:  5'- uGGGAGGUcguuGGC-GGCAGGCGg-GAGGc -3'
miRNA:   3'- -CCCUUUAu---UCGaCCGUUUGUgaCUCC- -5'
33280 5' -46.6 NC_007605.1 + 169085 0.66 0.999981
Target:  5'- cGGGuccccGGggGGCAAGCugUGGGa -3'
miRNA:   3'- -CCCuuuauUCgaCCGUUUGugACUCc -5'
33280 5' -46.6 NC_007605.1 + 164220 0.66 0.999981
Target:  5'- aGGGAGG-----UGGCc-ACACUGGGGa -3'
miRNA:   3'- -CCCUUUauucgACCGuuUGUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 162718 0.66 0.999964
Target:  5'- uGGAGcgGcugucucGGCUgGGCAuaGACGCUGaAGGa -3'
miRNA:   3'- cCCUUuaU-------UCGA-CCGU--UUGUGAC-UCC- -5'
33280 5' -46.6 NC_007605.1 + 161470 0.69 0.998625
Target:  5'- cGGGGc-UGGGCUGcGCAAGCagGCcGGGGg -3'
miRNA:   3'- -CCCUuuAUUCGAC-CGUUUG--UGaCUCC- -5'
33280 5' -46.6 NC_007605.1 + 157459 0.66 0.999937
Target:  5'- cGGAug-GGGCUGGgGgcgaugGACuGCUGGGGg -3'
miRNA:   3'- cCCUuuaUUCGACCgU------UUG-UGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 155611 0.74 0.964773
Target:  5'- -cGAAGgu-GCUGGCcuugaGGGCGCUGAGGa -3'
miRNA:   3'- ccCUUUauuCGACCG-----UUUGUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 153100 0.66 0.99998
Target:  5'- cGGGG----GGCUGGCGAAgAUUcccaaccGGGGg -3'
miRNA:   3'- -CCCUuuauUCGACCGUUUgUGA-------CUCC- -5'
33280 5' -46.6 NC_007605.1 + 150927 0.66 0.999974
Target:  5'- cGGGAcGUGgucGGCUGGCAccaGGC-CUGGc- -3'
miRNA:   3'- -CCCUuUAU---UCGACCGU---UUGuGACUcc -5'
33280 5' -46.6 NC_007605.1 + 148492 0.74 0.968127
Target:  5'- uGGGggGUGuGGUaUGGCAcAgGCUGGGGg -3'
miRNA:   3'- -CCCuuUAU-UCG-ACCGUuUgUGACUCC- -5'
33280 5' -46.6 NC_007605.1 + 147114 0.66 0.999981
Target:  5'- aGGGAcuuuGGUUGGCAAGCAgacAGGc -3'
miRNA:   3'- -CCCUuuauUCGACCGUUUGUgacUCC- -5'
33280 5' -46.6 NC_007605.1 + 144211 0.66 0.99998
Target:  5'- gGGGAGugguuuuguGUGAGCcggaaguUGGCAAugGggUGAGGg -3'
miRNA:   3'- -CCCUU---------UAUUCG-------ACCGUUugUg-ACUCC- -5'
33280 5' -46.6 NC_007605.1 + 144074 0.72 0.990214
Target:  5'- uGGGGGAUGGGCUcaGGCAAcCGuaaggGAGGg -3'
miRNA:   3'- -CCCUUUAUUCGA--CCGUUuGUga---CUCC- -5'
33280 5' -46.6 NC_007605.1 + 137594 0.67 0.999911
Target:  5'- uGGGAGAcuaaugugguggGGGCuaUGGUAGugGCUGGGa -3'
miRNA:   3'- -CCCUUUa-----------UUCG--ACCGUUugUGACUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.