miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33283 3' -53.9 NC_007605.1 + 135777 0.66 0.967585
Target:  5'- uGGCUCUUgaCGGUGaggggauccaGGUGAAGGCaGGc -3'
miRNA:   3'- -UCGAGAGg-GUCACg---------UCAUUUCCGaCC- -5'
33283 3' -53.9 NC_007605.1 + 39937 0.66 0.967585
Target:  5'- uGCUCUgcuggCCCGGUacgccuggauuGcCGGcUGGGGGCUGGg -3'
miRNA:   3'- uCGAGA-----GGGUCA-----------C-GUC-AUUUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 167303 0.66 0.964334
Target:  5'- uGCUaC-CUguGUGguGUGuuaAGGGCUGGg -3'
miRNA:   3'- uCGA-GaGGguCACguCAU---UUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 50595 0.66 0.957162
Target:  5'- cGCuUCUCCCGGgucgaacgcUGgAGUAgcgGAGGCUGc -3'
miRNA:   3'- uCG-AGAGGGUC---------ACgUCAU---UUCCGACc -5'
33283 3' -53.9 NC_007605.1 + 63592 0.66 0.954831
Target:  5'- uGGCUCUCCggCggcgccggggguggcGGUGgAGUAugcuucgucggGGGGCUGGg -3'
miRNA:   3'- -UCGAGAGG--G---------------UCACgUCAU-----------UUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 40138 0.66 0.95323
Target:  5'- uGCUggUCCGGUGCAccugGAAGGCaGGg -3'
miRNA:   3'- uCGAgaGGGUCACGUca--UUUCCGaCC- -5'
33283 3' -53.9 NC_007605.1 + 63089 0.66 0.95323
Target:  5'- uGGCggUCgCCGGgggugGCAGUGGAGGggGGa -3'
miRNA:   3'- -UCGagAG-GGUCa----CGUCAUUUCCgaCC- -5'
33283 3' -53.9 NC_007605.1 + 136994 0.66 0.95323
Target:  5'- cGCUaugUCCU--UGCGGUAGAGGgUGGc -3'
miRNA:   3'- uCGAg--AGGGucACGUCAUUUCCgACC- -5'
33283 3' -53.9 NC_007605.1 + 157271 0.66 0.949063
Target:  5'- aAGgUCUCCCAGcaUGCGGUugaucuGGCggcgcagGGa -3'
miRNA:   3'- -UCgAGAGGGUC--ACGUCAuuu---CCGa------CC- -5'
33283 3' -53.9 NC_007605.1 + 5958 0.67 0.940007
Target:  5'- cAGCuUCUCCa--UGCAGaguuuucugagGAGGGCUGGg -3'
miRNA:   3'- -UCG-AGAGGgucACGUCa----------UUUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 51848 0.68 0.918953
Target:  5'- gGGCUCagagugCCCGucGCAGUAGAGGaggGGa -3'
miRNA:   3'- -UCGAGa-----GGGUcaCGUCAUUUCCga-CC- -5'
33283 3' -53.9 NC_007605.1 + 157444 0.68 0.918953
Target:  5'- uGCUC-CCgCGGgccGCGGauGGGGCUGGg -3'
miRNA:   3'- uCGAGaGG-GUCa--CGUCauUUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 84151 0.68 0.918953
Target:  5'- uGGgUCUCCCGGUGCAcu---GGC-GGa -3'
miRNA:   3'- -UCgAGAGGGUCACGUcauuuCCGaCC- -5'
33283 3' -53.9 NC_007605.1 + 170266 0.68 0.913074
Target:  5'- uAGCgccgCUCuGUGCGG-GGGGGCUGGg -3'
miRNA:   3'- -UCGaga-GGGuCACGUCaUUUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 170789 0.68 0.913074
Target:  5'- uAGCgccgCUCuGUGCGG-GGGGGCUGGg -3'
miRNA:   3'- -UCGaga-GGGuCACGUCaUUUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 171326 0.68 0.913074
Target:  5'- uAGCgccgCUCuGUGCGG-GGGGGCUGGg -3'
miRNA:   3'- -UCGaga-GGGuCACGUCaUUUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 169729 0.68 0.913074
Target:  5'- uAGCgccgCUCuGUGCGG-GGGGGCUGGg -3'
miRNA:   3'- -UCGaga-GGGuCACGUCaUUUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 104825 0.68 0.907573
Target:  5'- gGGCUCUUCCGcgagccuggcuucaGCGGcugcgGAGGGCUGGg -3'
miRNA:   3'- -UCGAGAGGGUca------------CGUCa----UUUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 154746 0.68 0.893976
Target:  5'- cGCUCacaUCCCc-UGCAGgcGGGuGCUGGa -3'
miRNA:   3'- uCGAG---AGGGucACGUCauUUC-CGACC- -5'
33283 3' -53.9 NC_007605.1 + 159873 0.69 0.872754
Target:  5'- cAGCUC-CUCGGgcgacGCGGUgGAGGGCUGa -3'
miRNA:   3'- -UCGAGaGGGUCa----CGUCA-UUUCCGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.