miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33283 3' -53.9 NC_007605.1 + 5958 0.67 0.940007
Target:  5'- cAGCuUCUCCa--UGCAGaguuuucugagGAGGGCUGGg -3'
miRNA:   3'- -UCG-AGAGGgucACGUCa----------UUUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 157271 0.66 0.949063
Target:  5'- aAGgUCUCCCAGcaUGCGGUugaucuGGCggcgcagGGa -3'
miRNA:   3'- -UCgAGAGGGUC--ACGUCAuuu---CCGa------CC- -5'
33283 3' -53.9 NC_007605.1 + 136994 0.66 0.95323
Target:  5'- cGCUaugUCCU--UGCGGUAGAGGgUGGc -3'
miRNA:   3'- uCGAg--AGGGucACGUCAUUUCCgACC- -5'
33283 3' -53.9 NC_007605.1 + 40138 0.66 0.95323
Target:  5'- uGCUggUCCGGUGCAccugGAAGGCaGGg -3'
miRNA:   3'- uCGAgaGGGUCACGUca--UUUCCGaCC- -5'
33283 3' -53.9 NC_007605.1 + 63089 0.66 0.95323
Target:  5'- uGGCggUCgCCGGgggugGCAGUGGAGGggGGa -3'
miRNA:   3'- -UCGagAG-GGUCa----CGUCAUUUCCgaCC- -5'
33283 3' -53.9 NC_007605.1 + 63592 0.66 0.954831
Target:  5'- uGGCUCUCCggCggcgccggggguggcGGUGgAGUAugcuucgucggGGGGCUGGg -3'
miRNA:   3'- -UCGAGAGG--G---------------UCACgUCAU-----------UUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 50595 0.66 0.957162
Target:  5'- cGCuUCUCCCGGgucgaacgcUGgAGUAgcgGAGGCUGc -3'
miRNA:   3'- uCG-AGAGGGUC---------ACgUCAU---UUCCGACc -5'
33283 3' -53.9 NC_007605.1 + 167303 0.66 0.964334
Target:  5'- uGCUaC-CUguGUGguGUGuuaAGGGCUGGg -3'
miRNA:   3'- uCGA-GaGGguCACguCAU---UUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 39937 0.66 0.967585
Target:  5'- uGCUCUgcuggCCCGGUacgccuggauuGcCGGcUGGGGGCUGGg -3'
miRNA:   3'- uCGAGA-----GGGUCA-----------C-GUC-AUUUCCGACC- -5'
33283 3' -53.9 NC_007605.1 + 135777 0.66 0.967585
Target:  5'- uGGCUCUUgaCGGUGaggggauccaGGUGAAGGCaGGc -3'
miRNA:   3'- -UCGAGAGg-GUCACg---------UCAUUUCCGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.