Results 1 - 20 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 44182 | 1.1 | 0.004625 |
Target: 5'- aACCCAGCCUUCUCUACGCUUACCUGGu -3' miRNA: 3'- -UGGGUCGGAAGAGAUGCGAAUGGACC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 65536 | 0.75 | 0.610621 |
Target: 5'- gGCCUGGCCgaugUCUUUGCGg--ACCUGGg -3' miRNA: 3'- -UGGGUCGGa---AGAGAUGCgaaUGGACC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 2152 | 0.74 | 0.651985 |
Target: 5'- cUCUGGCCcUCUCcugACGCUgagGCCUGGg -3' miRNA: 3'- uGGGUCGGaAGAGa--UGCGAa--UGGACC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 29461 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 32530 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 26392 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 23323 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 14117 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 17185 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 20254 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 54174 | 0.72 | 0.752986 |
Target: 5'- -gCCAGCCUgggCgggGCGgUUGCCUGGg -3' miRNA: 3'- ugGGUCGGAagaGa--UGCgAAUGGACC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 155110 | 0.72 | 0.781596 |
Target: 5'- aACCCAGCC-UCUCUGgGCaaaauuagGgCUGGg -3' miRNA: 3'- -UGGGUCGGaAGAGAUgCGaa------UgGACC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 47266 | 0.71 | 0.8 |
Target: 5'- gACCCgcgaGGCCUUCUggGCGUUggcgGCCUGa -3' miRNA: 3'- -UGGG----UCGGAAGAgaUGCGAa---UGGACc -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 35307 | 0.71 | 0.826421 |
Target: 5'- gGCCCAGCCcccUCUCgcccaaGCuGCUUugauuCCUGGg -3' miRNA: 3'- -UGGGUCGGa--AGAGa-----UG-CGAAu----GGACC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 53913 | 0.7 | 0.843147 |
Target: 5'- aGCCCuGGCCUUagcuggggGCGCgggUGCCUGGc -3' miRNA: 3'- -UGGG-UCGGAAgaga----UGCGa--AUGGACC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 153451 | 0.69 | 0.873459 |
Target: 5'- gACCCuGCCUUCacggaggUCUGUGUagGCCUGGu -3' miRNA: 3'- -UGGGuCGGAAG-------AGAUGCGaaUGGACC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 123384 | 0.69 | 0.888414 |
Target: 5'- uAUCCAGCCUUCuUCUACGUaguCgaGGc -3' miRNA: 3'- -UGGGUCGGAAG-AGAUGCGaauGgaCC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 42328 | 0.69 | 0.89518 |
Target: 5'- gACCCaAGCCUUgggcGCGCguugGCCUGGa -3' miRNA: 3'- -UGGG-UCGGAAgagaUGCGaa--UGGACC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 98641 | 0.69 | 0.901711 |
Target: 5'- cGCCCAGCCaaUgUCUGCGUgcgaGCCgGGc -3' miRNA: 3'- -UGGGUCGGa-AgAGAUGCGaa--UGGaCC- -5' |
|||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 133252 | 0.69 | 0.908004 |
Target: 5'- gACCUggaugcuguaguGGCCUUCUCUGaug--GCCUGGa -3' miRNA: 3'- -UGGG------------UCGGAAGAGAUgcgaaUGGACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home