Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 2152 | 0.74 | 0.651985 |
Target: 5'- cUCUGGCCcUCUCcugACGCUgagGCCUGGg -3' miRNA: 3'- uGGGUCGGaAGAGa--UGCGAa--UGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 14117 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 17185 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 20254 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 23323 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 26392 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 29461 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 32530 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 35307 | 0.71 | 0.826421 |
Target: 5'- gGCCCAGCCcccUCUCgcccaaGCuGCUUugauuCCUGGg -3' miRNA: 3'- -UGGGUCGGa--AGAGa-----UG-CGAAu----GGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 40008 | 0.66 | 0.963692 |
Target: 5'- cACCCGGUUccCUCccccagggcgugcccCGCUUGCCUGGu -3' miRNA: 3'- -UGGGUCGGaaGAGau-------------GCGAAUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 42328 | 0.69 | 0.89518 |
Target: 5'- gACCCaAGCCUUgggcGCGCguugGCCUGGa -3' miRNA: 3'- -UGGG-UCGGAAgagaUGCGaa--UGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 44182 | 1.1 | 0.004625 |
Target: 5'- aACCCAGCCUUCUCUACGCUUACCUGGu -3' miRNA: 3'- -UGGGUCGGAAGAGAUGCGAAUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 47266 | 0.71 | 0.8 |
Target: 5'- gACCCgcgaGGCCUUCUggGCGUUggcgGCCUGa -3' miRNA: 3'- -UGGG----UCGGAAGAgaUGCGAa---UGGACc -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 52806 | 0.66 | 0.96791 |
Target: 5'- cAUCCGGCCUaCgCUGcCGCcuuCCUGGg -3' miRNA: 3'- -UGGGUCGGAaGaGAU-GCGaauGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 53913 | 0.7 | 0.843147 |
Target: 5'- aGCCCuGGCCUUagcuggggGCGCgggUGCCUGGc -3' miRNA: 3'- -UGGG-UCGGAAgaga----UGCGa--AUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 54174 | 0.72 | 0.752986 |
Target: 5'- -gCCAGCCUgggCgggGCGgUUGCCUGGg -3' miRNA: 3'- ugGGUCGGAagaGa--UGCgAAUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 64301 | 0.66 | 0.961268 |
Target: 5'- aGCCCGGCCUacgagcgcaucgUCUCca-GCggcUACCUGu -3' miRNA: 3'- -UGGGUCGGA------------AGAGaugCGa--AUGGACc -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 65536 | 0.75 | 0.610621 |
Target: 5'- gGCCUGGCCgaugUCUUUGCGg--ACCUGGg -3' miRNA: 3'- -UGGGUCGGa---AGAGAUGCgaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 67887 | 0.67 | 0.945261 |
Target: 5'- aGCCCGGCCgugC-CUGCGUUgGCCa-- -3' miRNA: 3'- -UGGGUCGGaa-GaGAUGCGAaUGGacc -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 73915 | 0.66 | 0.96791 |
Target: 5'- gGCCuCGGCCgaUCUCgUGCGCUacgucUAUUUGGc -3' miRNA: 3'- -UGG-GUCGGa-AGAG-AUGCGA-----AUGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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