Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 77586 | 0.66 | 0.964698 |
Target: 5'- uUCCagGGCCUgacgCUugGCUgguggUGCCUGGg -3' miRNA: 3'- uGGG--UCGGAaga-GAugCGA-----AUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 98302 | 0.68 | 0.914057 |
Target: 5'- cCCCAGCCUgaggaacaUCUACGCggAgCUGc -3' miRNA: 3'- uGGGUCGGAag------AGAUGCGaaUgGACc -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 98641 | 0.69 | 0.901711 |
Target: 5'- cGCCCAGCCaaUgUCUGCGUgcgaGCCgGGc -3' miRNA: 3'- -UGGGUCGGa-AgAGAUGCGaa--UGGaCC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 117284 | 0.66 | 0.976293 |
Target: 5'- cGCCUAGCCUccuccCUCUACGUgUACgUUGa -3' miRNA: 3'- -UGGGUCGGAa----GAGAUGCGaAUG-GACc -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 123384 | 0.69 | 0.888414 |
Target: 5'- uAUCCAGCCUUCuUCUACGUaguCgaGGc -3' miRNA: 3'- -UGGGUCGGAAG-AGAUGCGaauGgaCC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 127371 | 0.67 | 0.944812 |
Target: 5'- uCCaCAGCCccaCUCUugccucgGCGCUgggacUGCCUGGg -3' miRNA: 3'- uGG-GUCGGaa-GAGA-------UGCGA-----AUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 133252 | 0.69 | 0.908004 |
Target: 5'- gACCUggaugcuguaguGGCCUUCUCUGaug--GCCUGGa -3' miRNA: 3'- -UGGG------------UCGGAAGAGAUgcgaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 133356 | 0.66 | 0.976293 |
Target: 5'- aGCCCAGCCguucaCUCg--GCUcACCgGGa -3' miRNA: 3'- -UGGGUCGGaa---GAGaugCGAaUGGaCC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 136628 | 0.69 | 0.908004 |
Target: 5'- cUCCGGCCUaCUUUG-GCUUGCCgGGc -3' miRNA: 3'- uGGGUCGGAaGAGAUgCGAAUGGaCC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 149356 | 0.66 | 0.96791 |
Target: 5'- aACCCGGUCU--UCUACGUcUACCcacaggagUGGa -3' miRNA: 3'- -UGGGUCGGAagAGAUGCGaAUGG--------ACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 153451 | 0.69 | 0.873459 |
Target: 5'- gACCCuGCCUUCacggaggUCUGUGUagGCCUGGu -3' miRNA: 3'- -UGGGuCGGAAG-------AGAUGCGaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 155110 | 0.72 | 0.781596 |
Target: 5'- aACCCAGCC-UCUCUGgGCaaaauuagGgCUGGg -3' miRNA: 3'- -UGGGUCGGaAGAGAUgCGaa------UgGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 163083 | 0.66 | 0.96791 |
Target: 5'- cGCCCAaCCUUCUUgccCGCUaUGCCUa- -3' miRNA: 3'- -UGGGUcGGAAGAGau-GCGA-AUGGAcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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