Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33283 | 5' | -53.6 | NC_007605.1 | + | 163083 | 0.66 | 0.96791 |
Target: 5'- cGCCCAaCCUUCUUgccCGCUaUGCCUa- -3' miRNA: 3'- -UGGGUcGGAAGAGau-GCGA-AUGGAcc -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 73915 | 0.66 | 0.96791 |
Target: 5'- gGCCuCGGCCgaUCUCgUGCGCUacgucUAUUUGGc -3' miRNA: 3'- -UGG-GUCGGa-AGAG-AUGCGA-----AUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 155110 | 0.72 | 0.781596 |
Target: 5'- aACCCAGCC-UCUCUGgGCaaaauuagGgCUGGg -3' miRNA: 3'- -UGGGUCGGaAGAGAUgCGaa------UgGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 14117 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 44182 | 1.1 | 0.004625 |
Target: 5'- aACCCAGCCUUCUCUACGCUUACCUGGu -3' miRNA: 3'- -UGGGUCGGAAGAGAUGCGAAUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 2152 | 0.74 | 0.651985 |
Target: 5'- cUCUGGCCcUCUCcugACGCUgagGCCUGGg -3' miRNA: 3'- uGGGUCGGaAGAGa--UGCGAa--UGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 32530 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 29461 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 26392 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 23323 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 20254 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 17185 | 0.72 | 0.743219 |
Target: 5'- uCCCGGCCUUagaucuggCUCuUugGCagGCCUGGu -3' miRNA: 3'- uGGGUCGGAA--------GAG-AugCGaaUGGACC- -5' |
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33283 | 5' | -53.6 | NC_007605.1 | + | 52806 | 0.66 | 0.96791 |
Target: 5'- cAUCCGGCCUaCgCUGcCGCcuuCCUGGg -3' miRNA: 3'- -UGGGUCGGAaGaGAU-GCGaauGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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