miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33284 5' -54.2 NC_007605.1 + 27695 0.68 0.914443
Target:  5'- cCCaGCACCcggucccuccgggggGCAGAGACagGCAgGGCCc -3'
miRNA:   3'- aGG-CGUGG---------------UGUCUUUGa-UGUgCCGGa -5'
33284 5' -54.2 NC_007605.1 + 29005 0.71 0.759961
Target:  5'- cUgGCGCCcuugccuggagGCAGAGACUGgGCGGCUg -3'
miRNA:   3'- aGgCGUGG-----------UGUCUUUGAUgUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 29486 0.69 0.886185
Target:  5'- aCUGCAcCCGCuuuGggGCUGCcucuccCGGCCUu -3'
miRNA:   3'- aGGCGU-GGUGu--CuuUGAUGu-----GCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 30764 0.68 0.914443
Target:  5'- cCCaGCACCcggucccuccgggggGCAGAGACagGCAgGGCCc -3'
miRNA:   3'- aGG-CGUGG---------------UGUCUUUGa-UGUgCCGGa -5'
33284 5' -54.2 NC_007605.1 + 32074 0.71 0.759961
Target:  5'- cUgGCGCCcuugccuggagGCAGAGACUGgGCGGCUg -3'
miRNA:   3'- aGgCGUGG-----------UGUCUUUGAUgUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 32555 0.69 0.886185
Target:  5'- aCUGCAcCCGCuuuGggGCUGCcucuccCGGCCUu -3'
miRNA:   3'- aGGCGU-GGUGu--CuuUGAUGu-----GCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 33833 0.68 0.914443
Target:  5'- cCCaGCACCcggucccuccgggggGCAGAGACagGCAgGGCCc -3'
miRNA:   3'- aGG-CGUGG---------------UGUCUUUGa-UGUgCCGGa -5'
33284 5' -54.2 NC_007605.1 + 35142 0.71 0.759961
Target:  5'- cUgGCGCCcuugccuggagGCAGAGACUGgGCGGCUg -3'
miRNA:   3'- aGgCGUGG-----------UGUCUUUGAUgUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 38902 0.66 0.963471
Target:  5'- uUCCugGCGCUcCGGggGCaGCggGCGGCCg -3'
miRNA:   3'- -AGG--CGUGGuGUCuuUGaUG--UGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 40202 0.69 0.878418
Target:  5'- cCCGCGCCgacugGCAGggGgUccccaugGCACaGGCCUa -3'
miRNA:   3'- aGGCGUGG-----UGUCuuUgA-------UGUG-CCGGA- -5'
33284 5' -54.2 NC_007605.1 + 44698 1.08 0.005366
Target:  5'- aUCCGCACCACAGAAACUACACGGCCUc -3'
miRNA:   3'- -AGGCGUGGUGUCUUUGAUGUGCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 47488 0.68 0.914443
Target:  5'- -gCGCGCCACaccuuaucuggcacgGGugcuGGCUGuCACGGCCg -3'
miRNA:   3'- agGCGUGGUG---------------UCu---UUGAU-GUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 48976 0.72 0.73067
Target:  5'- gCCGCagaGCCGCAGuugGAGCaguacACACGGCCg -3'
miRNA:   3'- aGGCG---UGGUGUC---UUUGa----UGUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 50332 0.67 0.939013
Target:  5'- -aCGCGCgGCGGAGAUgcagccgacgGCGgGGCCg -3'
miRNA:   3'- agGCGUGgUGUCUUUGa---------UGUgCCGGa -5'
33284 5' -54.2 NC_007605.1 + 50597 0.71 0.759
Target:  5'- cCCGUgccaaagGCCACGGggGCgcugGCGGCCg -3'
miRNA:   3'- aGGCG-------UGGUGUCuuUGaug-UGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 52123 0.67 0.943221
Target:  5'- cUCCGC-CCugGGGAGCUcuucuccGCGuguauaGGCCUg -3'
miRNA:   3'- -AGGCGuGGugUCUUUGA-------UGUg-----CCGGA- -5'
33284 5' -54.2 NC_007605.1 + 52886 0.75 0.56723
Target:  5'- gCgGCGCUgggcggGCGGAAGCUACACuGGCCa -3'
miRNA:   3'- aGgCGUGG------UGUCUUUGAUGUG-CCGGa -5'
33284 5' -54.2 NC_007605.1 + 53604 0.71 0.757075
Target:  5'- cCCGCGCCAgcucaagaucguggUGGAGGCUGCcaGgGGCCUg -3'
miRNA:   3'- aGGCGUGGU--------------GUCUUUGAUG--UgCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 53756 0.66 0.947235
Target:  5'- cCCGCACggccuCGCAGAugccccggauccACUugGCGGCUg -3'
miRNA:   3'- aGGCGUG-----GUGUCUu-----------UGAugUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 54371 0.73 0.688408
Target:  5'- aUCCGUguugaccACCGCugauuucauguccGGGGACUGCAgGGCCUg -3'
miRNA:   3'- -AGGCG-------UGGUG-------------UCUUUGAUGUgCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.