miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33284 5' -54.2 NC_007605.1 + 215 0.66 0.956244
Target:  5'- gCCGCugCACaaaGGAAACUGCugacacCGGUg- -3'
miRNA:   3'- aGGCGugGUG---UCUUUGAUGu-----GCCGga -5'
33284 5' -54.2 NC_007605.1 + 2438 0.66 0.966752
Target:  5'- gUCCGCGCUGC-GAGACacuUACucgGGCCa -3'
miRNA:   3'- -AGGCGUGGUGuCUUUG---AUGug-CCGGa -5'
33284 5' -54.2 NC_007605.1 + 3992 0.71 0.788218
Target:  5'- gUCCGCGCCggGCAGAcAACU---CGGCCg -3'
miRNA:   3'- -AGGCGUGG--UGUCU-UUGAuguGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 5221 0.75 0.577416
Target:  5'- aUCaGCGCCACGGug---GCACGGCCUg -3'
miRNA:   3'- -AGgCGUGGUGUCuuugaUGUGCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 9170 0.66 0.963471
Target:  5'- gUCCGCuuauCGGuAGCUACACaGGCCc -3'
miRNA:   3'- -AGGCGugguGUCuUUGAUGUG-CCGGa -5'
33284 5' -54.2 NC_007605.1 + 12350 0.68 0.914443
Target:  5'- cCCaGCACCcggucccuccgggggGCAGAGACagGCAgGGCCc -3'
miRNA:   3'- aGG-CGUGG---------------UGUCUUUGa-UGUgCCGGa -5'
33284 5' -54.2 NC_007605.1 + 13660 0.71 0.759961
Target:  5'- cUgGCGCCcuugccuggagGCAGAGACUGgGCGGCUg -3'
miRNA:   3'- aGgCGUGG-----------UGUCUUUGAUgUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 14141 0.67 0.939013
Target:  5'- -aCGCAcCCGCuuuGggGCUGCcucuccCGGCCUu -3'
miRNA:   3'- agGCGU-GGUGu--CuuUGAUGu-----GCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 15419 0.68 0.914443
Target:  5'- cCCaGCACCcggucccuccgggggGCAGAGACagGCAgGGCCc -3'
miRNA:   3'- aGG-CGUGG---------------UGUCUUUGa-UGUgCCGGa -5'
33284 5' -54.2 NC_007605.1 + 16729 0.71 0.759961
Target:  5'- cUgGCGCCcuugccuggagGCAGAGACUGgGCGGCUg -3'
miRNA:   3'- aGgCGUGG-----------UGUCUUUGAUgUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 17210 0.69 0.886185
Target:  5'- aCUGCAcCCGCuuuGggGCUGCcucuccCGGCCUu -3'
miRNA:   3'- aGGCGU-GGUGu--CuuUGAUGu-----GCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 18488 0.68 0.914443
Target:  5'- cCCaGCACCcggucccuccgggggGCAGAGACagGCAgGGCCc -3'
miRNA:   3'- aGG-CGUGG---------------UGUCUUUGa-UGUgCCGGa -5'
33284 5' -54.2 NC_007605.1 + 19798 0.71 0.759961
Target:  5'- cUgGCGCCcuugccuggagGCAGAGACUGgGCGGCUg -3'
miRNA:   3'- aGgCGUGG-----------UGUCUUUGAUgUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 20279 0.69 0.886185
Target:  5'- aCUGCAcCCGCuuuGggGCUGCcucuccCGGCCUu -3'
miRNA:   3'- aGGCGU-GGUGu--CuuUGAUGu-----GCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 21557 0.68 0.914443
Target:  5'- cCCaGCACCcggucccuccgggggGCAGAGACagGCAgGGCCc -3'
miRNA:   3'- aGG-CGUGG---------------UGUCUUUGa-UGUgCCGGa -5'
33284 5' -54.2 NC_007605.1 + 22867 0.71 0.759961
Target:  5'- cUgGCGCCcuugccuggagGCAGAGACUGgGCGGCUg -3'
miRNA:   3'- aGgCGUGG-----------UGUCUUUGAUgUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 23348 0.69 0.886185
Target:  5'- aCUGCAcCCGCuuuGggGCUGCcucuccCGGCCUu -3'
miRNA:   3'- aGGCGU-GGUGu--CuuUGAUGu-----GCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 24626 0.68 0.914443
Target:  5'- cCCaGCACCcggucccuccgggggGCAGAGACagGCAgGGCCc -3'
miRNA:   3'- aGG-CGUGG---------------UGUCUUUGa-UGUgCCGGa -5'
33284 5' -54.2 NC_007605.1 + 25936 0.71 0.759961
Target:  5'- cUgGCGCCcuugccuggagGCAGAGACUGgGCGGCUg -3'
miRNA:   3'- aGgCGUGG-----------UGUCUUUGAUgUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 26417 0.69 0.886185
Target:  5'- aCUGCAcCCGCuuuGggGCUGCcucuccCGGCCUu -3'
miRNA:   3'- aGGCGU-GGUGu--CuuUGAUGu-----GCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.