miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33284 5' -54.2 NC_007605.1 + 100631 0.66 0.961397
Target:  5'- gCCGUgagGCC-CGGAAGCccgaccagggucuugUACugGGCCa -3'
miRNA:   3'- aGGCG---UGGuGUCUUUG---------------AUGugCCGGa -5'
33284 5' -54.2 NC_007605.1 + 171182 0.66 0.956244
Target:  5'- gUCCGCggGCUcCGGggGCUGCggGCGGUg- -3'
miRNA:   3'- -AGGCG--UGGuGUCuuUGAUG--UGCCGga -5'
33284 5' -54.2 NC_007605.1 + 66885 0.66 0.956244
Target:  5'- -aCGCcuaCGCAGAGGCcauCAUGGCCg -3'
miRNA:   3'- agGCGug-GUGUCUUUGau-GUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 160539 0.66 0.959969
Target:  5'- -gUGCACCAgcucCAGGGACagggcgcugcaUGCACGGUCa -3'
miRNA:   3'- agGCGUGGU----GUCUUUG-----------AUGUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 165186 0.66 0.948101
Target:  5'- cCUGUGCCGCAuGAAACUGgGCGaGaCCg -3'
miRNA:   3'- aGGCGUGGUGU-CUUUGAUgUGC-C-GGa -5'
33284 5' -54.2 NC_007605.1 + 102070 0.66 0.952289
Target:  5'- cCUGCAUC-CAGAAGCg--AUGGCCg -3'
miRNA:   3'- aGGCGUGGuGUCUUUGaugUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 58061 0.66 0.952289
Target:  5'- gCCGCggaggccgggGCCGCGGAGGC--CGgGGCCg -3'
miRNA:   3'- aGGCG----------UGGUGUCUUUGauGUgCCGGa -5'
33284 5' -54.2 NC_007605.1 + 136868 0.66 0.952289
Target:  5'- cCUGCGCCgGgAGAcGCUGuccUACGGCCa -3'
miRNA:   3'- aGGCGUGG-UgUCUuUGAU---GUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 132763 0.66 0.956244
Target:  5'- cUCGCAaggCACAGAGGCUAgAgGGCa- -3'
miRNA:   3'- aGGCGUg--GUGUCUUUGAUgUgCCGga -5'
33284 5' -54.2 NC_007605.1 + 170122 0.66 0.956244
Target:  5'- gUCCGCggGCUcCGGggGCUGCggGCGGUg- -3'
miRNA:   3'- -AGGCG--UGGuGUCuuUGAUG--UGCCGga -5'
33284 5' -54.2 NC_007605.1 + 169585 0.66 0.956244
Target:  5'- gUCCGCggGCUcCGGggGCUGCggGCGGUg- -3'
miRNA:   3'- -AGGCG--UGGuGUCuuUGAUG--UGCCGga -5'
33284 5' -54.2 NC_007605.1 + 215 0.66 0.956244
Target:  5'- gCCGCugCACaaaGGAAACUGCugacacCGGUg- -3'
miRNA:   3'- aGGCGugGUG---UCUUUGAUGu-----GCCGga -5'
33284 5' -54.2 NC_007605.1 + 138885 0.66 0.948101
Target:  5'- aCCGgaCACCGCGGAgggccaAACUcCGCGGuCCUu -3'
miRNA:   3'- aGGC--GUGGUGUCU------UUGAuGUGCC-GGA- -5'
33284 5' -54.2 NC_007605.1 + 141689 0.66 0.966752
Target:  5'- gUCCGCugCcccgcuccgGCGGggGgUGC-CGGCUg -3'
miRNA:   3'- -AGGCGugG---------UGUCuuUgAUGuGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 38902 0.66 0.963471
Target:  5'- uUCCugGCGCUcCGGggGCaGCggGCGGCCg -3'
miRNA:   3'- -AGG--CGUGGuGUCuuUGaUG--UGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 55995 0.66 0.966752
Target:  5'- cUCCGCACCAUccuGGAcGACaucgaggcaaUGUugGGCCUg -3'
miRNA:   3'- -AGGCGUGGUG---UCU-UUG----------AUGugCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 9170 0.66 0.963471
Target:  5'- gUCCGCuuauCGGuAGCUACACaGGCCc -3'
miRNA:   3'- -AGGCGugguGUCuUUGAUGUG-CCGGa -5'
33284 5' -54.2 NC_007605.1 + 80693 0.66 0.948101
Target:  5'- aUCCcCGCUACAGuauuuucuuuGACUAUAUGGCUa -3'
miRNA:   3'- -AGGcGUGGUGUCu---------UUGAUGUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 58807 0.66 0.946798
Target:  5'- aCCGCcccucaggACCACGG-AGCUgggcacguccgucaACugGGCCa -3'
miRNA:   3'- aGGCG--------UGGUGUCuUUGA--------------UGugCCGGa -5'
33284 5' -54.2 NC_007605.1 + 53756 0.66 0.947235
Target:  5'- cCCGCACggccuCGCAGAugccccggauccACUugGCGGCUg -3'
miRNA:   3'- aGGCGUG-----GUGUCUu-----------UGAugUGCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.