miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33284 5' -54.2 NC_007605.1 + 44698 1.08 0.005366
Target:  5'- aUCCGCACCACAGAAACUACACGGCCUc -3'
miRNA:   3'- -AGGCGUGGUGUCUUUGAUGUGCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 161658 0.78 0.379979
Target:  5'- aCUGCgACCACGGugguCUGCGCGGCCa -3'
miRNA:   3'- aGGCG-UGGUGUCuuu-GAUGUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 52886 0.75 0.56723
Target:  5'- gCgGCGCUgggcggGCGGAAGCUACACuGGCCa -3'
miRNA:   3'- aGgCGUGG------UGUCUUUGAUGUG-CCGGa -5'
33284 5' -54.2 NC_007605.1 + 5221 0.75 0.577416
Target:  5'- aUCaGCGCCACGGug---GCACGGCCUg -3'
miRNA:   3'- -AGgCGUGGUGUCuuugaUGUGCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 72902 0.74 0.597902
Target:  5'- gUCUGUGCUGCAGAAGCUcauggGCcuaACGGCCUg -3'
miRNA:   3'- -AGGCGUGGUGUCUUUGA-----UG---UGCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 74466 0.73 0.636025
Target:  5'- gCUGCACCugccgGCGGAGGaggccuuccccuucCUGCGCGGCCUc -3'
miRNA:   3'- aGGCGUGG-----UGUCUUU--------------GAUGUGCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 103010 0.73 0.680243
Target:  5'- aUCCGCuCCAUGGAgucucAGCUGCA-GGCCUc -3'
miRNA:   3'- -AGGCGuGGUGUCU-----UUGAUGUgCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 54371 0.73 0.688408
Target:  5'- aUCCGUguugaccACCGCugauuucauguccGGGGACUGCAgGGCCUg -3'
miRNA:   3'- -AGGCG-------UGGUG-------------UCUUUGAUGUgCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 157461 0.73 0.690445
Target:  5'- aCCGCAUgCugGGAGACcuUGCGCgGGCCUg -3'
miRNA:   3'- aGGCGUG-GugUCUUUG--AUGUG-CCGGA- -5'
33284 5' -54.2 NC_007605.1 + 154347 0.73 0.690445
Target:  5'- -gCGCaagGCCAUcaAGAAGCUGCugGCGGCCUg -3'
miRNA:   3'- agGCG---UGGUG--UCUUUGAUG--UGCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 131481 0.72 0.700599
Target:  5'- aCCGCAUCGguuCAGGGACUACaAUGGUCa -3'
miRNA:   3'- aGGCGUGGU---GUCUUUGAUG-UGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 48976 0.72 0.73067
Target:  5'- gCCGCagaGCCGCAGuugGAGCaguacACACGGCCg -3'
miRNA:   3'- aGGCG---UGGUGUC---UUUGa----UGUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 72532 0.71 0.7503
Target:  5'- gUCUGCGCCAUgauagAGGGACauCugGGCCUg -3'
miRNA:   3'- -AGGCGUGGUG-----UCUUUGauGugCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 53604 0.71 0.757075
Target:  5'- cCCGCGCCAgcucaagaucguggUGGAGGCUGCcaGgGGCCUg -3'
miRNA:   3'- aGGCGUGGU--------------GUCUUUGAUG--UgCCGGA- -5'
33284 5' -54.2 NC_007605.1 + 50597 0.71 0.759
Target:  5'- cCCGUgccaaagGCCACGGggGCgcugGCGGCCg -3'
miRNA:   3'- aGGCG-------UGGUGUCuuUGaug-UGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 32074 0.71 0.759961
Target:  5'- cUgGCGCCcuugccuggagGCAGAGACUGgGCGGCUg -3'
miRNA:   3'- aGgCGUGG-----------UGUCUUUGAUgUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 35142 0.71 0.759961
Target:  5'- cUgGCGCCcuugccuggagGCAGAGACUGgGCGGCUg -3'
miRNA:   3'- aGgCGUGG-----------UGUCUUUGAUgUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 25936 0.71 0.759961
Target:  5'- cUgGCGCCcuugccuggagGCAGAGACUGgGCGGCUg -3'
miRNA:   3'- aGgCGUGG-----------UGUCUUUGAUgUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 22867 0.71 0.759961
Target:  5'- cUgGCGCCcuugccuggagGCAGAGACUGgGCGGCUg -3'
miRNA:   3'- aGgCGUGG-----------UGUCUUUGAUgUGCCGGa -5'
33284 5' -54.2 NC_007605.1 + 29005 0.71 0.759961
Target:  5'- cUgGCGCCcuugccuggagGCAGAGACUGgGCGGCUg -3'
miRNA:   3'- aGgCGUGG-----------UGUCUUUGAUgUGCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.