miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33285 5' -56.2 NC_007605.1 + 45121 1.11 0.001966
Target:  5'- uGGCUGCAGAUGUGCACCCCGCAAGACu -3'
miRNA:   3'- -CCGACGUCUACACGUGGGGCGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 164108 0.78 0.312607
Target:  5'- uGGCUGCccAGAuuauccucgcuagucUGUGCACCCUGCAuGAUg -3'
miRNA:   3'- -CCGACG--UCU---------------ACACGUGGGGCGUuCUG- -5'
33285 5' -56.2 NC_007605.1 + 143233 0.77 0.316937
Target:  5'- cGGCUgGgAGGUGUGCACCCCccgaGCGucuGGACg -3'
miRNA:   3'- -CCGA-CgUCUACACGUGGGG----CGU---UCUG- -5'
33285 5' -56.2 NC_007605.1 + 40418 0.77 0.316937
Target:  5'- cGGCUgGgAGGUGUGCACCCCccgaGCGucuGGACg -3'
miRNA:   3'- -CCGA-CgUCUACACGUGGGG----CGU---UCUG- -5'
33285 5' -56.2 NC_007605.1 + 145762 0.76 0.369956
Target:  5'- gGGaagGCAGGcgacaauUG-GCACCCCGCGAGACc -3'
miRNA:   3'- -CCga-CGUCU-------ACaCGUGGGGCGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 157432 0.73 0.514941
Target:  5'- cGGCgGCGGggGUGC-UCCCGCGGGcCg -3'
miRNA:   3'- -CCGaCGUCuaCACGuGGGGCGUUCuG- -5'
33285 5' -56.2 NC_007605.1 + 141900 0.72 0.604298
Target:  5'- cGGCUGCAGccG-GcCACCCCcgccggaGCGGGGCa -3'
miRNA:   3'- -CCGACGUCuaCaC-GUGGGG-------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 143123 0.72 0.615552
Target:  5'- cGGCUGCAGccG-GcCACCCCccgccggaGCGGGGCa -3'
miRNA:   3'- -CCGACGUCuaCaC-GUGGGG--------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 143021 0.72 0.615552
Target:  5'- cGGCUGCAGccG-GcCACCCCccgccggaGCGGGGCa -3'
miRNA:   3'- -CCGACGUCuaCaC-GUGGGG--------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 142614 0.72 0.615552
Target:  5'- cGGCUGCAGccG-GcCACCCCccgccggaGCGGGGCa -3'
miRNA:   3'- -CCGACGUCuaCaC-GUGGGG--------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 142716 0.72 0.615552
Target:  5'- cGGCUGCAGccG-GcCACCCCccgccggaGCGGGGCa -3'
miRNA:   3'- -CCGACGUCuaCaC-GUGGGG--------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 143225 0.72 0.615552
Target:  5'- cGGCUGCAGccG-GcCACCCCccgccggaGCGGGGCa -3'
miRNA:   3'- -CCGACGUCuaCaC-GUGGGG--------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 142818 0.72 0.615552
Target:  5'- cGGCUGCAGccG-GcCACCCCccgccggaGCGGGGCa -3'
miRNA:   3'- -CCGACGUCuaCaC-GUGGGG--------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 142512 0.72 0.615552
Target:  5'- cGGCUGCAGccG-GcCACCCCccgccggaGCGGGGCa -3'
miRNA:   3'- -CCGACGUCuaCaC-GUGGGG--------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 142410 0.72 0.615552
Target:  5'- cGGCUGCAGccG-GcCACCCCccgccggaGCGGGGCa -3'
miRNA:   3'- -CCGACGUCuaCaC-GUGGGG--------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 142308 0.72 0.615552
Target:  5'- cGGCUGCAGccG-GcCACCCCccgccggaGCGGGGCa -3'
miRNA:   3'- -CCGACGUCuaCaC-GUGGGG--------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 142206 0.72 0.615552
Target:  5'- cGGCUGCAGccG-GcCACCCCccgccggaGCGGGGCa -3'
miRNA:   3'- -CCGACGUCuaCaC-GUGGGG--------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 142104 0.72 0.615552
Target:  5'- cGGCUGCAGccG-GcCACCCCccgccggaGCGGGGCa -3'
miRNA:   3'- -CCGACGUCuaCaC-GUGGGG--------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 142002 0.72 0.615552
Target:  5'- cGGCUGCAGccG-GcCACCCCccgccggaGCGGGGCa -3'
miRNA:   3'- -CCGACGUCuaCaC-GUGGGG--------CGUUCUG- -5'
33285 5' -56.2 NC_007605.1 + 142919 0.72 0.615552
Target:  5'- cGGCUGCAGccG-GcCACCCCccgccggaGCGGGGCa -3'
miRNA:   3'- -CCGACGUCuaCaC-GUGGGG--------CGUUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.