Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33285 | 5' | -56.2 | NC_007605.1 | + | 39451 | 0.67 | 0.867706 |
Target: 5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3' miRNA: 3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 38452 | 0.67 | 0.867706 |
Target: 5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3' miRNA: 3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 38577 | 0.67 | 0.867706 |
Target: 5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3' miRNA: 3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 38702 | 0.67 | 0.867706 |
Target: 5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3' miRNA: 3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 38827 | 0.67 | 0.867706 |
Target: 5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3' miRNA: 3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 38951 | 0.67 | 0.867706 |
Target: 5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3' miRNA: 3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 39076 | 0.67 | 0.867706 |
Target: 5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3' miRNA: 3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 39201 | 0.67 | 0.867706 |
Target: 5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3' miRNA: 3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 39326 | 0.67 | 0.867706 |
Target: 5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3' miRNA: 3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 38327 | 0.67 | 0.867706 |
Target: 5'- cGCUGCcccgcuccgggugGGggGUG-GCCCCGCuGGGCa -3' miRNA: 3'- cCGACG-------------UCuaCACgUGGGGCGuUCUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 81517 | 0.67 | 0.853163 |
Target: 5'- aGGCUGCGGGgcagGccuuUGCA-CCCGUuAGACc -3' miRNA: 3'- -CCGACGUCUa---C----ACGUgGGGCGuUCUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 158156 | 0.67 | 0.837073 |
Target: 5'- uGGCUggcGUAGcgGcGCACCCCGUuggccAGGCc -3' miRNA: 3'- -CCGA---CGUCuaCaCGUGGGGCGu----UCUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 40418 | 0.77 | 0.316937 |
Target: 5'- cGGCUgGgAGGUGUGCACCCCccgaGCGucuGGACg -3' miRNA: 3'- -CCGA-CgUCUACACGUGGGG----CGU---UCUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 143233 | 0.77 | 0.316937 |
Target: 5'- cGGCUgGgAGGUGUGCACCCCccgaGCGucuGGACg -3' miRNA: 3'- -CCGA-CgUCUACACGUGGGG----CGU---UCUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 157432 | 0.73 | 0.514941 |
Target: 5'- cGGCgGCGGggGUGC-UCCCGCGGGcCg -3' miRNA: 3'- -CCGaCGUCuaCACGuGGGGCGUUCuG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 68063 | 0.7 | 0.676932 |
Target: 5'- cGUUGCAGAagUGgGCACgCCaGCAAGGCu -3' miRNA: 3'- cCGACGUCU--ACaCGUGgGG-CGUUCUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 103889 | 0.7 | 0.707238 |
Target: 5'- --aUGgAGAUGUGCGCCCUGCucucGAUg -3' miRNA: 3'- ccgACgUCUACACGUGGGGCGuu--CUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 154942 | 0.69 | 0.775289 |
Target: 5'- uGCUGUAGAUGUGCcugGCUCUGUccagaauguAGGGCc -3' miRNA: 3'- cCGACGUCUACACG---UGGGGCG---------UUCUG- -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 156420 | 0.68 | 0.793715 |
Target: 5'- cGGCUGCugcgacaucuGGcgcGUGCGCCUCGUGAGGg -3' miRNA: 3'- -CCGACG----------UCua-CACGUGGGGCGUUCUg -5' |
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33285 | 5' | -56.2 | NC_007605.1 | + | 109391 | 0.68 | 0.811556 |
Target: 5'- cGGUUgGCGGAUGcGU-CCCCGCAgaugagcuuacAGACa -3' miRNA: 3'- -CCGA-CGUCUACaCGuGGGGCGU-----------UCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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