miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33287 5' -54.2 NC_007605.1 + 39137 0.73 0.670682
Target:  5'- cCGGAGcGGGGCAgcGGCCcagcggACCCACCGg -3'
miRNA:   3'- -GCCUUcUUCCGUa-UCGGa-----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 39262 0.73 0.670682
Target:  5'- cCGGAGcGGGGCAgcGGCCcagcggACCCACCGg -3'
miRNA:   3'- -GCCUUcUUCCGUa-UCGGa-----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 39387 0.73 0.670682
Target:  5'- cCGGAGcGGGGCAgcGGCCcagcggACCCACCGg -3'
miRNA:   3'- -GCCUUcUUCCGUa-UCGGa-----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 39512 0.73 0.670682
Target:  5'- cCGGAGcGGGGCAgcGGCCcagcggACCCACCGg -3'
miRNA:   3'- -GCCUUcUUCCGUa-UCGGa-----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 39637 0.73 0.670682
Target:  5'- cCGGAGcGGGGCAgcGGCCcagcggACCCACCGg -3'
miRNA:   3'- -GCCUUcUUCCGUa-UCGGa-----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 39762 0.73 0.670682
Target:  5'- cCGGAGcGGGGCAgcGGCCcagcggACCCACCGg -3'
miRNA:   3'- -GCCUUcUUCCGUa-UCGGa-----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 39805 0.68 0.894055
Target:  5'- aGGguGggGGCGUGGuccCCUGgaccccagcCCCGCCGa -3'
miRNA:   3'- gCCuuCuuCCGUAUC---GGAU---------GGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 39887 0.73 0.670682
Target:  5'- cCGGAGcGGGGCAgcGGCCcagcggACCCACCGg -3'
miRNA:   3'- -GCCUUcUUCCGUa-UCGGa-----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 40173 0.69 0.857748
Target:  5'- aGGGAGggGGCGUcccgggaccccAGCC--CCCAgCCGg -3'
miRNA:   3'- gCCUUCuuCCGUA-----------UCGGauGGGU-GGU- -5'
33287 5' -54.2 NC_007605.1 + 40179 0.69 0.841724
Target:  5'- aGGGAG-GGGCGUGGuCCUgggACCCcgcGCCGa -3'
miRNA:   3'- gCCUUCuUCCGUAUC-GGA---UGGG---UGGU- -5'
33287 5' -54.2 NC_007605.1 + 40242 0.66 0.960701
Target:  5'- gGGGuccAGggGGC--AGCCgcgGCCCAgCGc -3'
miRNA:   3'- gCCU---UCuuCCGuaUCGGa--UGGGUgGU- -5'
33287 5' -54.2 NC_007605.1 + 40281 0.66 0.964169
Target:  5'- aCGGggGAGGacCGcGGCCgAgCCACCAg -3'
miRNA:   3'- -GCCuuCUUCc-GUaUCGGaUgGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 40662 0.73 0.65004
Target:  5'- aGGAuaaaAGAAGGCG-AGCCggcccgGCUCGCCAg -3'
miRNA:   3'- gCCU----UCUUCCGUaUCGGa-----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 42081 0.69 0.843363
Target:  5'- gGGAAGAAGGCAagcgaaaauugagggUgggAGCaauuccaacacaUACCCACCAa -3'
miRNA:   3'- gCCUUCUUCCGU---------------A---UCGg-----------AUGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 46146 1.09 0.004713
Target:  5'- gCGGAAGAAGGCAUAGCCUACCCACCAc -3'
miRNA:   3'- -GCCUUCUUCCGUAUCGGAUGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 50411 0.66 0.960701
Target:  5'- uGGccuuuGGCAcgGGCCUggcACCCACCGc -3'
miRNA:   3'- gCCuucuuCCGUa-UCGGA---UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 51038 0.67 0.939897
Target:  5'- uCGacGGGAGGCAUAGCUc-CCaCACCAu -3'
miRNA:   3'- -GCcuUCUUCCGUAUCGGauGG-GUGGU- -5'
33287 5' -54.2 NC_007605.1 + 51228 0.7 0.816247
Target:  5'- gGGGAGGAGGUAggagacAGCCagucccuggGCCUGCCAg -3'
miRNA:   3'- gCCUUCUUCCGUa-----UCGGa--------UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 51678 0.68 0.892037
Target:  5'- aCGGuGGggGGCcUGGCCUccuuagguuuggcgGCCCugGCCu -3'
miRNA:   3'- -GCCuUCuuCCGuAUCGGA--------------UGGG--UGGu -5'
33287 5' -54.2 NC_007605.1 + 51886 0.66 0.953085
Target:  5'- aGGGccgccaaaccuaAGGAGGCcaGGCCc-CCCACCGu -3'
miRNA:   3'- gCCU------------UCUUCCGuaUCGGauGGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.