miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33287 5' -54.2 NC_007605.1 + 1757 0.69 0.865451
Target:  5'- --aAAGAGGGCAaAGCCUACaaaaGCCAa -3'
miRNA:   3'- gccUUCUUCCGUaUCGGAUGgg--UGGU- -5'
33287 5' -54.2 NC_007605.1 + 2399 0.66 0.962809
Target:  5'- aCGGAAGGAGggccggcuucuauGCAccucgaagccaaacuGCCUGCCCAUCu -3'
miRNA:   3'- -GCCUUCUUC-------------CGUau-------------CGGAUGGGUGGu -5'
33287 5' -54.2 NC_007605.1 + 2815 0.69 0.865451
Target:  5'- aGGGAGGAGag--GGCCUacaGCCCACUAu -3'
miRNA:   3'- gCCUUCUUCcguaUCGGA---UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 4640 0.67 0.921195
Target:  5'- uCGGAGGccaccGGCAUAGUgauggucacuccccgCUGCCCgGCCAg -3'
miRNA:   3'- -GCCUUCuu---CCGUAUCG---------------GAUGGG-UGGU- -5'
33287 5' -54.2 NC_007605.1 + 6203 0.72 0.712517
Target:  5'- uCGGAAGGcAGGCGgggccUAGCaaugucacagcuaaaUGCCCACCAg -3'
miRNA:   3'- -GCCUUCU-UCCGU-----AUCGg--------------AUGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 7088 0.68 0.913066
Target:  5'- uGGGAGAAgGGUAUucGGCUUGUCCGCUAu -3'
miRNA:   3'- gCCUUCUU-CCGUA--UCGGAUGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 14013 0.72 0.721565
Target:  5'- gCGGGAGggGGCugGGCCUcACCC-UCGg -3'
miRNA:   3'- -GCCUUCuuCCGuaUCGGA-UGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 17082 0.72 0.721565
Target:  5'- gCGGGAGggGGCugGGCCUcACCC-UCGg -3'
miRNA:   3'- -GCCUUCuuCCGuaUCGGA-UGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 20150 0.7 0.807401
Target:  5'- gCGGGAGggGGCugGGCCUcACCUcggggACCc -3'
miRNA:   3'- -GCCUUCuuCCGuaUCGGA-UGGG-----UGGu -5'
33287 5' -54.2 NC_007605.1 + 23219 0.72 0.721565
Target:  5'- gCGGGAGggGGCugGGCCUcACCC-UCGg -3'
miRNA:   3'- -GCCUUCuuCCGuaUCGGA-UGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 26288 0.72 0.721565
Target:  5'- gCGGGAGggGGCugGGCCUcACCC-UCGg -3'
miRNA:   3'- -GCCUUCuuCCGuaUCGGA-UGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 29357 0.72 0.721565
Target:  5'- gCGGGAGggGGCugGGCCUcACCC-UCGg -3'
miRNA:   3'- -GCCUUCuuCCGuaUCGGA-UGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 32426 0.72 0.721565
Target:  5'- gCGGGAGggGGCugGGCCUcACCC-UCGg -3'
miRNA:   3'- -GCCUUCuuCCGuaUCGGA-UGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 36308 0.66 0.957008
Target:  5'- aGGuuGuuGGCAUGuaCCUGCCCAaCCAc -3'
miRNA:   3'- gCCuuCuuCCGUAUc-GGAUGGGU-GGU- -5'
33287 5' -54.2 NC_007605.1 + 37740 0.66 0.960701
Target:  5'- gGGAAaAAGGUuUAGCUauUCCACCAa -3'
miRNA:   3'- gCCUUcUUCCGuAUCGGauGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 38513 0.73 0.670682
Target:  5'- cCGGAGcGGGGCAgcGGCCcagcggACCCACCGg -3'
miRNA:   3'- -GCCUUcUUCCGUa-UCGGa-----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 38638 0.73 0.670682
Target:  5'- cCGGAGcGGGGCAgcGGCCcagcggACCCACCGg -3'
miRNA:   3'- -GCCUUcUUCCGUa-UCGGa-----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 38763 0.73 0.670682
Target:  5'- cCGGAGcGGGGCAgcGGCCcagcggACCCACCGg -3'
miRNA:   3'- -GCCUUcUUCCGUa-UCGGa-----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 38888 0.73 0.670682
Target:  5'- cCGGAGcGGGGCAgcGGCCcagcggACCCACCGg -3'
miRNA:   3'- -GCCUUcUUCCGUa-UCGGa-----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 39013 0.73 0.670682
Target:  5'- cCGGAGcGGGGCAgcGGCCcagcggACCCACCGg -3'
miRNA:   3'- -GCCUUcUUCCGUa-UCGGa-----UGGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.