miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33287 5' -54.2 NC_007605.1 + 105674 0.66 0.960701
Target:  5'- cCGGugccAGAAGGCc-GGCCUcGCCCGucCCAc -3'
miRNA:   3'- -GCCu---UCUUCCGuaUCGGA-UGGGU--GGU- -5'
33287 5' -54.2 NC_007605.1 + 40242 0.66 0.960701
Target:  5'- gGGGuccAGggGGC--AGCCgcgGCCCAgCGc -3'
miRNA:   3'- gCCU---UCuuCCGuaUCGGa--UGGGUgGU- -5'
33287 5' -54.2 NC_007605.1 + 37740 0.66 0.960701
Target:  5'- gGGAAaAAGGUuUAGCUauUCCACCAa -3'
miRNA:   3'- gCCUUcUUCCGuAUCGGauGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 50411 0.66 0.960701
Target:  5'- uGGccuuuGGCAcgGGCCUggcACCCACCGc -3'
miRNA:   3'- gCCuucuuCCGUa-UCGGA---UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 125708 0.66 0.960701
Target:  5'- cCGGGAGAucAGGacgagGGCCg--CCACCAa -3'
miRNA:   3'- -GCCUUCU--UCCgua--UCGGaugGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 74453 0.66 0.95268
Target:  5'- gCGGAGGAGGccuuccccuuccuGCGcGGCCUcacgccGCUCACCGc -3'
miRNA:   3'- -GCCUUCUUC-------------CGUaUCGGA------UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 51886 0.66 0.953085
Target:  5'- aGGGccgccaaaccuaAGGAGGCcaGGCCc-CCCACCGu -3'
miRNA:   3'- gCCU------------UCUUCCGuaUCGGauGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 85651 0.66 0.964169
Target:  5'- cCGGAcccugguGAAGGCu--GCCaGCCCGCa- -3'
miRNA:   3'- -GCCUu------CUUCCGuauCGGaUGGGUGgu -5'
33287 5' -54.2 NC_007605.1 + 122253 0.66 0.953085
Target:  5'- uCGG-AGAAGGCAaaGGCCaccaGCCCguucACCAa -3'
miRNA:   3'- -GCCuUCUUCCGUa-UCGGa---UGGG----UGGU- -5'
33287 5' -54.2 NC_007605.1 + 63394 0.66 0.957008
Target:  5'- cCGGAcuuuGGgcGGCugGUGGCCga-CCGCCGc -3'
miRNA:   3'- -GCCU----UCuuCCG--UAUCGGaugGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 153554 0.66 0.956626
Target:  5'- uGGGAGAggAGGCuggccGCCUccuuuacccgggcAUCCGCCAg -3'
miRNA:   3'- gCCUUCU--UCCGuau--CGGA-------------UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 53827 0.66 0.948927
Target:  5'- uGGAAgucGAGGGCAUGGCCcagaACuCCAUgGa -3'
miRNA:   3'- gCCUU---CUUCCGUAUCGGa---UG-GGUGgU- -5'
33287 5' -54.2 NC_007605.1 + 60259 0.66 0.94408
Target:  5'- aGGAGgcgccuucuGAGGGUggccgugucggccGUGGCCaggGCCCACCu -3'
miRNA:   3'- gCCUU---------CUUCCG-------------UAUCGGa--UGGGUGGu -5'
33287 5' -54.2 NC_007605.1 + 153454 0.66 0.948499
Target:  5'- aGuGAAGggGGCGagaaagacggagaUGGCCgaggACCCgGCCu -3'
miRNA:   3'- gC-CUUCuuCCGU-------------AUCGGa---UGGG-UGGu -5'
33287 5' -54.2 NC_007605.1 + 155329 0.66 0.948927
Target:  5'- gGGGAGGAGGCcgGGCgCUAuaggcgcauCCUGCUg -3'
miRNA:   3'- gCCUUCUUCCGuaUCG-GAU---------GGGUGGu -5'
33287 5' -54.2 NC_007605.1 + 149916 0.66 0.957008
Target:  5'- aGGAgaaAGAAGGUAacuugaAGCUgaguaucugGCCCACCGa -3'
miRNA:   3'- gCCU---UCUUCCGUa-----UCGGa--------UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 58307 0.66 0.958513
Target:  5'- aCGGGAGGgcugcuaucagcaccGGGCGUccccgccGCCUcCCCAUCAc -3'
miRNA:   3'- -GCCUUCU---------------UCCGUAu------CGGAuGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 40281 0.66 0.964169
Target:  5'- aCGGggGAGGacCGcGGCCgAgCCACCAg -3'
miRNA:   3'- -GCCuuCUUCc-GUaUCGGaUgGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 58880 0.66 0.960701
Target:  5'- uGGGcauGAGGGCAUccAGCCgcGCCC-CCu -3'
miRNA:   3'- gCCUu--CUUCCGUA--UCGGa-UGGGuGGu -5'
33287 5' -54.2 NC_007605.1 + 167844 0.66 0.957008
Target:  5'- aCGGAGGcggcGGCAUAGUCaugauuCCgGCCAu -3'
miRNA:   3'- -GCCUUCuu--CCGUAUCGGau----GGgUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.