miRNA display CGI


Results 1 - 20 of 161 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33287 5' -54.2 NC_007605.1 + 142054 0.74 0.608648
Target:  5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3'
miRNA:   3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 141239 0.74 0.608648
Target:  5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3'
miRNA:   3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 141341 0.74 0.608648
Target:  5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3'
miRNA:   3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 141443 0.74 0.608648
Target:  5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3'
miRNA:   3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 141545 0.74 0.608648
Target:  5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3'
miRNA:   3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 141647 0.74 0.608648
Target:  5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3'
miRNA:   3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 141748 0.74 0.608648
Target:  5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3'
miRNA:   3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 141850 0.74 0.608648
Target:  5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3'
miRNA:   3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 141952 0.74 0.608648
Target:  5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3'
miRNA:   3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 141137 0.74 0.608648
Target:  5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3'
miRNA:   3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 141035 0.74 0.608648
Target:  5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3'
miRNA:   3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 140933 0.74 0.608648
Target:  5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3'
miRNA:   3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 169499 0.78 0.405184
Target:  5'- aGuGGAGggGGCGUGGCCUuCCC-CCGc -3'
miRNA:   3'- gC-CUUCuuCCGUAUCGGAuGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 170036 0.78 0.405184
Target:  5'- aGuGGAGggGGCGUGGCCUuCCC-CCGc -3'
miRNA:   3'- gC-CUUCuuCCGUAUCGGAuGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 170559 0.78 0.405184
Target:  5'- aGuGGAGggGGCGUGGCCUuCCC-CCGc -3'
miRNA:   3'- gC-CUUCuuCCGUAUCGGAuGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 171096 0.78 0.405184
Target:  5'- aGuGGAGggGGCGUGGCCUuCCC-CCGc -3'
miRNA:   3'- gC-CUUCuuCCGUAUCGGAuGGGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 59059 0.75 0.527165
Target:  5'- aGGAugcGGAGGGCcgAGCCUccacuCCCGCCc -3'
miRNA:   3'- gCCU---UCUUCCGuaUCGGAu----GGGUGGu -5'
33287 5' -54.2 NC_007605.1 + 98166 0.75 0.537167
Target:  5'- aGGAGGAcauGuGCAUGGCCUggGCCCGCUu -3'
miRNA:   3'- gCCUUCUu--C-CGUAUCGGA--UGGGUGGu -5'
33287 5' -54.2 NC_007605.1 + 140729 0.74 0.608648
Target:  5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3'
miRNA:   3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 140831 0.74 0.608648
Target:  5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3'
miRNA:   3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.