Results 1 - 20 of 161 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 46146 | 1.09 | 0.004713 |
Target: 5'- gCGGAAGAAGGCAUAGCCUACCCACCAc -3' miRNA: 3'- -GCCUUCUUCCGUAUCGGAUGGGUGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 105841 | 0.83 | 0.210404 |
Target: 5'- gCGGAGGAAGGCGUagAGCCcGCCCccgGCCAu -3' miRNA: 3'- -GCCUUCUUCCGUA--UCGGaUGGG---UGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 170036 | 0.78 | 0.405184 |
Target: 5'- aGuGGAGggGGCGUGGCCUuCCC-CCGc -3' miRNA: 3'- gC-CUUCuuCCGUAUCGGAuGGGuGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 170559 | 0.78 | 0.405184 |
Target: 5'- aGuGGAGggGGCGUGGCCUuCCC-CCGc -3' miRNA: 3'- gC-CUUCuuCCGUAUCGGAuGGGuGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 171096 | 0.78 | 0.405184 |
Target: 5'- aGuGGAGggGGCGUGGCCUuCCC-CCGc -3' miRNA: 3'- gC-CUUCuuCCGUAUCGGAuGGGuGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 169499 | 0.78 | 0.405184 |
Target: 5'- aGuGGAGggGGCGUGGCCUuCCC-CCGc -3' miRNA: 3'- gC-CUUCuuCCGUAUCGGAuGGGuGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 59059 | 0.75 | 0.527165 |
Target: 5'- aGGAugcGGAGGGCcgAGCCUccacuCCCGCCc -3' miRNA: 3'- gCCU---UCUUCCGuaUCGGAu----GGGUGGu -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 143477 | 0.75 | 0.537167 |
Target: 5'- aGGAuaaaAGAAGGCGagcUGGCCcgGCUCGCCAg -3' miRNA: 3'- gCCU----UCUUCCGU---AUCGGa-UGGGUGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 98166 | 0.75 | 0.537167 |
Target: 5'- aGGAGGAcauGuGCAUGGCCUggGCCCGCUu -3' miRNA: 3'- gCCUUCUu--C-CGUAUCGGA--UGGGUGGu -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 153757 | 0.75 | 0.547234 |
Target: 5'- cCGGGuaaAGGAGGCGgccAGCCUccucuCCCACCGg -3' miRNA: 3'- -GCCU---UCUUCCGUa--UCGGAu----GGGUGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 141952 | 0.74 | 0.608648 |
Target: 5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3' miRNA: 3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 141850 | 0.74 | 0.608648 |
Target: 5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3' miRNA: 3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 141748 | 0.74 | 0.608648 |
Target: 5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3' miRNA: 3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 141443 | 0.74 | 0.608648 |
Target: 5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3' miRNA: 3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 141341 | 0.74 | 0.608648 |
Target: 5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3' miRNA: 3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 141239 | 0.74 | 0.608648 |
Target: 5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3' miRNA: 3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 141137 | 0.74 | 0.608648 |
Target: 5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3' miRNA: 3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 141035 | 0.74 | 0.608648 |
Target: 5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3' miRNA: 3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 140933 | 0.74 | 0.608648 |
Target: 5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3' miRNA: 3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5' |
|||||||
33287 | 5' | -54.2 | NC_007605.1 | + | 142054 | 0.74 | 0.608648 |
Target: 5'- uGGAgcucGGggGGC--GGCCgggugGCCCACCGg -3' miRNA: 3'- gCCU----UCuuCCGuaUCGGa----UGGGUGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home