miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 50358 0.66 0.982339
Target:  5'- cGGGGCCgcggugggcUGCCCCcGAggACGGGcgCCg -3'
miRNA:   3'- -CCCCGG---------ACGGGGuUUggUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 127327 0.66 0.986022
Target:  5'- cGGGGCCgUGCaCCU--GCCAuCGGGacagauugucUUCCa -3'
miRNA:   3'- -CCCCGG-ACG-GGGuuUGGU-GUUU----------AAGG- -5'
33288 3' -52.8 NC_007605.1 + 121247 0.66 0.986022
Target:  5'- aGGGGCUguagagGCCCgGGACgGCcg--UCUg -3'
miRNA:   3'- -CCCCGGa-----CGGGgUUUGgUGuuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 51947 0.66 0.986022
Target:  5'- aGGGGCCgaccgaggaagGCCgCC--GCCACGGccgCCu -3'
miRNA:   3'- -CCCCGGa----------CGG-GGuuUGGUGUUuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 162662 0.66 0.977969
Target:  5'- aGGaGCCcgagGCCCCgAGAUCACAuaggggUCCc -3'
miRNA:   3'- cCC-CGGa---CGGGG-UUUGGUGUuua---AGG- -5'
33288 3' -52.8 NC_007605.1 + 158364 0.66 0.981934
Target:  5'- gGGGGCCUGgCCaacggggugcGCCGCuacg-CCa -3'
miRNA:   3'- -CCCCGGACgGGguu-------UGGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 160198 0.66 0.980243
Target:  5'- aGGGCgCgGUCCCGGGCC-CGGGgcggCCg -3'
miRNA:   3'- cCCCG-GaCGGGGUUUGGuGUUUaa--GG- -5'
33288 3' -52.8 NC_007605.1 + 158632 0.66 0.982339
Target:  5'- uGGGGUCUGCgcaCCgAGACgGCAcg--CCa -3'
miRNA:   3'- -CCCCGGACG---GGgUUUGgUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 81855 0.66 0.977969
Target:  5'- aGGGGCCguugGUaCCAGAgCAgCAGAUguUCCc -3'
miRNA:   3'- -CCCCGGa---CGgGGUUUgGU-GUUUA--AGG- -5'
33288 3' -52.8 NC_007605.1 + 18633 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 24771 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 53381 0.66 0.980024
Target:  5'- uGGGGCaauggaGCCCCGAcccggcgGgCACAAuUUCUg -3'
miRNA:   3'- -CCCCGga----CGGGGUU-------UgGUGUUuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 27840 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 45276 0.66 0.986022
Target:  5'- uGGuGGCCUgGCCCCccga-GCAGG-UCCg -3'
miRNA:   3'- -CC-CCGGA-CGGGGuuuggUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 10640 0.66 0.984077
Target:  5'- aGGGGCacaagaaUGCCggcgaaaCUGGACCACGG--UCCa -3'
miRNA:   3'- -CCCCGg------ACGG-------GGUUUGGUGUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 168801 0.66 0.984262
Target:  5'- gGGGGCCgucgcggGCCCgGugGGCCccucuCAAggucguGUUCCa -3'
miRNA:   3'- -CCCCGGa------CGGGgU--UUGGu----GUU------UAAGG- -5'
33288 3' -52.8 NC_007605.1 + 157439 0.66 0.986022
Target:  5'- gGGGGUgCU-CCCgCGGGCCGCGGAUggggCUg -3'
miRNA:   3'- -CCCCG-GAcGGG-GUUUGGUGUUUAa---GG- -5'
33288 3' -52.8 NC_007605.1 + 151109 0.66 0.980024
Target:  5'- --cGCCUGCCCCGucccACCcCAAGgucaugcUUCCu -3'
miRNA:   3'- cccCGGACGGGGUu---UGGuGUUU-------AAGG- -5'
33288 3' -52.8 NC_007605.1 + 62278 0.66 0.977969
Target:  5'- uGGuGGUCUcuuucaccGCCCCGAGUCACu--UUCCa -3'
miRNA:   3'- -CC-CCGGA--------CGGGGUUUGGUGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 91749 0.66 0.982339
Target:  5'- cGGGGCCUcGgCCCuGGCCuc---UUCCc -3'
miRNA:   3'- -CCCCGGA-CgGGGuUUGGuguuuAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.