miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 162802 0.66 0.977969
Target:  5'- uGGcGGCC-GCCCCc-GCCACGuagcugCCc -3'
miRNA:   3'- -CC-CCGGaCGGGGuuUGGUGUuuaa--GG- -5'
33288 3' -52.8 NC_007605.1 + 27840 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 18633 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 94892 0.66 0.982339
Target:  5'- -cGGCCcugccuccgGCCCCAucCCGCGAGccCCa -3'
miRNA:   3'- ccCCGGa--------CGGGGUuuGGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 10640 0.66 0.984077
Target:  5'- aGGGGCacaagaaUGCCggcgaaaCUGGACCACGG--UCCa -3'
miRNA:   3'- -CCCCGg------ACGG-------GGUUUGGUGUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 3745 0.66 0.980024
Target:  5'- uGGGGCUccucccuUGCCCUAucguACCugGGAUc-- -3'
miRNA:   3'- -CCCCGG-------ACGGGGUu---UGGugUUUAagg -5'
33288 3' -52.8 NC_007605.1 + 21702 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 158632 0.66 0.982339
Target:  5'- uGGGGUCUGCgcaCCgAGACgGCAcg--CCa -3'
miRNA:   3'- -CCCCGGACG---GGgUUUGgUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 53430 0.66 0.977969
Target:  5'- cGGGUCggugugGCCCCuGGCCugGGugaCCa -3'
miRNA:   3'- cCCCGGa-----CGGGGuUUGGugUUuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 50358 0.66 0.982339
Target:  5'- cGGGGCCgcggugggcUGCCCCcGAggACGGGcgCCg -3'
miRNA:   3'- -CCCCGG---------ACGGGGuUUggUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 54012 0.66 0.977969
Target:  5'- aGGGUCUGgcucUCCCGGACCuGCuc-UUCCa -3'
miRNA:   3'- cCCCGGAC----GGGGUUUGG-UGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 47515 0.66 0.986022
Target:  5'- cGGcGCC-GCCUCGgauuccGACCACGAGUcuuugucccUCCa -3'
miRNA:   3'- cCC-CGGaCGGGGU------UUGGUGUUUA---------AGG- -5'
33288 3' -52.8 NC_007605.1 + 81855 0.66 0.977969
Target:  5'- aGGGGCCguugGUaCCAGAgCAgCAGAUguUCCc -3'
miRNA:   3'- -CCCCGGa---CGgGGUUUgGU-GUUUA--AGG- -5'
33288 3' -52.8 NC_007605.1 + 55006 0.66 0.982339
Target:  5'- gGGGGCagUGUCCagaaAGGCCuCGAgcuGUUCCu -3'
miRNA:   3'- -CCCCGg-ACGGGg---UUUGGuGUU---UAAGG- -5'
33288 3' -52.8 NC_007605.1 + 15564 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 114210 0.66 0.977969
Target:  5'- cGGGCCUGgCCaCGguGGCUA-GGGUUCCa -3'
miRNA:   3'- cCCCGGACgGG-GU--UUGGUgUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 12495 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 4085 0.66 0.982339
Target:  5'- -cGGCCuccUGCCCCgAGACCgGCucg-UCCg -3'
miRNA:   3'- ccCCGG---ACGGGG-UUUGG-UGuuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 162662 0.66 0.977969
Target:  5'- aGGaGCCcgagGCCCCgAGAUCACAuaggggUCCc -3'
miRNA:   3'- cCC-CGGa---CGGGG-UUUGGUGUuua---AGG- -5'
33288 3' -52.8 NC_007605.1 + 24771 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.