miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 3177 0.7 0.905925
Target:  5'- uGGGGCCgGCCa-GGGCCACGGGa-CCu -3'
miRNA:   3'- -CCCCGGaCGGggUUUGGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 3745 0.66 0.980024
Target:  5'- uGGGGCUccucccuUGCCCUAucguACCugGGAUc-- -3'
miRNA:   3'- -CCCCGG-------ACGGGGUu---UGGugUUUAagg -5'
33288 3' -52.8 NC_007605.1 + 3855 0.7 0.892922
Target:  5'- aGGGGaCCUaCCCCGGGCUGCugug-CCa -3'
miRNA:   3'- -CCCC-GGAcGGGGUUUGGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 3914 0.73 0.768771
Target:  5'- cGGGCCUGgUCCAGACCugacugugggcaACGAAggcguagUCCg -3'
miRNA:   3'- cCCCGGACgGGGUUUGG------------UGUUUa------AGG- -5'
33288 3' -52.8 NC_007605.1 + 4085 0.66 0.982339
Target:  5'- -cGGCCuccUGCCCCgAGACCgGCucg-UCCg -3'
miRNA:   3'- ccCCGG---ACGGGG-UUUGG-UGuuuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 6265 0.67 0.975506
Target:  5'- cGGGGUCUcggaGCUCCuaggucAGACCACGAAaggUCa -3'
miRNA:   3'- -CCCCGGA----CGGGG------UUUGGUGUUUa--AGg -5'
33288 3' -52.8 NC_007605.1 + 8298 0.73 0.768771
Target:  5'- gGGGGCUgacgcgUGCCCCcacuCCACAAuUUCa -3'
miRNA:   3'- -CCCCGG------ACGGGGuuu-GGUGUUuAAGg -5'
33288 3' -52.8 NC_007605.1 + 8599 0.69 0.923622
Target:  5'- -cGGCUUGuCCCCAccCCAUGGAUUUCu -3'
miRNA:   3'- ccCCGGAC-GGGGUuuGGUGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 10007 0.71 0.840294
Target:  5'- --cGCCUGCgCagguGCCACAGGUUCCu -3'
miRNA:   3'- cccCGGACGgGguu-UGGUGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 10640 0.66 0.984077
Target:  5'- aGGGGCacaagaaUGCCggcgaaaCUGGACCACGG--UCCa -3'
miRNA:   3'- -CCCCGg------ACGG-------GGUUUGGUGUUuaAGG- -5'
33288 3' -52.8 NC_007605.1 + 12374 0.67 0.972848
Target:  5'- aGGuGGCCUGgCCCGGGgUGCGugg-CCa -3'
miRNA:   3'- -CC-CCGGACgGGGUUUgGUGUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 12495 0.66 0.984262
Target:  5'- aGGGGCCUgGCUCC--GCCGgGugg-CCc -3'
miRNA:   3'- -CCCCGGA-CGGGGuuUGGUgUuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 12942 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 13028 0.67 0.972848
Target:  5'- aGGGGCUcuggggUGCCCgAggUCcCuGGUUCCu -3'
miRNA:   3'- -CCCCGG------ACGGGgUuuGGuGuUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 13028 0.69 0.923622
Target:  5'- cGGGCg-GCCCCAGagGCCG---GUUCCu -3'
miRNA:   3'- cCCCGgaCGGGGUU--UGGUguuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 13128 0.7 0.886068
Target:  5'- uGGGGCCUggGCCCCGAGgguggcuccCCuCAGAcaUUCUu -3'
miRNA:   3'- -CCCCGGA--CGGGGUUU---------GGuGUUU--AAGG- -5'
33288 3' -52.8 NC_007605.1 + 13210 0.68 0.952432
Target:  5'- uGGGGCC-GCCCgGGcuGCCGgGGucccUCCg -3'
miRNA:   3'- -CCCCGGaCGGGgUU--UGGUgUUua--AGG- -5'
33288 3' -52.8 NC_007605.1 + 13340 0.67 0.969988
Target:  5'- aGGGCCcaaagagGCCCCucuCCGCGAGg--- -3'
miRNA:   3'- cCCCGGa------CGGGGuuuGGUGUUUaagg -5'
33288 3' -52.8 NC_007605.1 + 13684 0.68 0.952432
Target:  5'- uGGGCCUgGCUCC---CCAUAGAcUCCc -3'
miRNA:   3'- cCCCGGA-CGGGGuuuGGUGUUUaAGG- -5'
33288 3' -52.8 NC_007605.1 + 14319 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.