miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 8298 0.73 0.768771
Target:  5'- gGGGGCUgacgcgUGCCCCcacuCCACAAuUUCa -3'
miRNA:   3'- -CCCCGG------ACGGGGuuu-GGUGUUuAAGg -5'
33288 3' -52.8 NC_007605.1 + 19079 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 22148 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 25217 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 28286 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 31355 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 34424 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 85630 0.73 0.739643
Target:  5'- uGGGGCCuaUGCCUCccACCGau-AUUCCg -3'
miRNA:   3'- -CCCCGG--ACGGGGuuUGGUguuUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 72150 0.73 0.768771
Target:  5'- uGGGUaUGCCUCAGGCaCGCAaAGUUCCu -3'
miRNA:   3'- cCCCGgACGGGGUUUG-GUGU-UUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 16010 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 12942 0.73 0.739643
Target:  5'- cGGGGCCcagGCCCCAGAgUcCAGAggUCa -3'
miRNA:   3'- -CCCCGGa--CGGGGUUUgGuGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 111967 0.74 0.719727
Target:  5'- aGGGCCccuuuUGCCCCGuGCCGCAGcgUa- -3'
miRNA:   3'- cCCCGG-----ACGGGGUuUGGUGUUuaAgg -5'
33288 3' -52.8 NC_007605.1 + 58117 0.77 0.565558
Target:  5'- cGGGGCCgcggaGgCCgGGGCCGCAGAggCCg -3'
miRNA:   3'- -CCCCGGa----CgGGgUUUGGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 58147 0.77 0.565558
Target:  5'- cGGGGCCgcagaGgCCgGGGCCGCAGAggCCg -3'
miRNA:   3'- -CCCCGGa----CgGGgUUUGGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 58057 0.75 0.648093
Target:  5'- cGGGGCCgcggaGgCCgGGGCCGCGGAggCCg -3'
miRNA:   3'- -CCCCGGa----CgGGgUUUGGUGUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 68150 0.75 0.658436
Target:  5'- gGGaGGCCUGCCUCAcccuaGACUACAAg--CCu -3'
miRNA:   3'- -CC-CCGGACGGGGU-----UUGGUGUUuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 114645 0.75 0.662568
Target:  5'- gGGGGCCUGgagucgaucaccuuaCCCCAGGCCGaggccccUUCCu -3'
miRNA:   3'- -CCCCGGAC---------------GGGGUUUGGUguuu---AAGG- -5'
33288 3' -52.8 NC_007605.1 + 87775 0.75 0.668758
Target:  5'- cGGGGCCUccugccgcgggGCCUCcuGCCGCGGGgccUCCu -3'
miRNA:   3'- -CCCCGGA-----------CGGGGuuUGGUGUUUa--AGG- -5'
33288 3' -52.8 NC_007605.1 + 65459 0.75 0.675966
Target:  5'- uGGuGGCCUGCUCCAuucuucagggaucccCCACuuauGAUUCCa -3'
miRNA:   3'- -CC-CCGGACGGGGUuu-------------GGUGu---UUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 74695 0.75 0.679049
Target:  5'- uGGGCCUGCCCCcuGGugUGCAGGUg-- -3'
miRNA:   3'- cCCCGGACGGGG--UUugGUGUUUAagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.