miRNA display CGI


Results 41 - 60 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 3' -52.8 NC_007605.1 + 162802 0.66 0.977969
Target:  5'- uGGcGGCC-GCCCCc-GCCACGuagcugCCc -3'
miRNA:   3'- -CC-CCGGaCGGGGuuUGGUGUuuaa--GG- -5'
33288 3' -52.8 NC_007605.1 + 62278 0.66 0.977969
Target:  5'- uGGuGGUCUcuuucaccGCCCCGAGUCACu--UUCCa -3'
miRNA:   3'- -CC-CCGGA--------CGGGGUUUGGUGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 60760 0.67 0.975506
Target:  5'- uGGGCCUGgCCacccGCCGCu--UUCUg -3'
miRNA:   3'- cCCCGGACgGGguu-UGGUGuuuAAGG- -5'
33288 3' -52.8 NC_007605.1 + 61809 0.67 0.975506
Target:  5'- aGGGCCuccaucucUGCCgCCAucccGGCCAgGAAggCCu -3'
miRNA:   3'- cCCCGG--------ACGG-GGU----UUGGUgUUUaaGG- -5'
33288 3' -52.8 NC_007605.1 + 136649 0.67 0.975506
Target:  5'- cGGGCCUcuuugGCCCCccuCCACccGUgccUCCu -3'
miRNA:   3'- cCCCGGA-----CGGGGuuuGGUGuuUA---AGG- -5'
33288 3' -52.8 NC_007605.1 + 134299 0.67 0.975506
Target:  5'- aGGGCCucgagUGCggCUAAACCuacgcGCAGGUUCCa -3'
miRNA:   3'- cCCCGG-----ACGg-GGUUUGG-----UGUUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 6265 0.67 0.975506
Target:  5'- cGGGGUCUcggaGCUCCuaggucAGACCACGAAaggUCa -3'
miRNA:   3'- -CCCCGGA----CGGGG------UUUGGUGUUUa--AGg -5'
33288 3' -52.8 NC_007605.1 + 26595 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 100371 0.67 0.972848
Target:  5'- cGGGCUgcucaUGCCCguGGgccuCCACGAAgcugUCCg -3'
miRNA:   3'- cCCCGG-----ACGGGguUU----GGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 142633 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 141919 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 62798 0.67 0.972848
Target:  5'- cGGGCgaGCCCCccguCCACcucugCCa -3'
miRNA:   3'- cCCCGgaCGGGGuuu-GGUGuuuaaGG- -5'
33288 3' -52.8 NC_007605.1 + 56741 0.67 0.972848
Target:  5'- uGGGGaCCUGCagauguCCCG-ACCAguccuuuaaGAAUUCCa -3'
miRNA:   3'- -CCCC-GGACG------GGGUuUGGUg--------UUUAAGG- -5'
33288 3' -52.8 NC_007605.1 + 32733 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 29664 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 23526 0.67 0.972848
Target:  5'- gGGGGaccaCUGCCCCu-GgUAUAAAguggUCCu -3'
miRNA:   3'- -CCCCg---GACGGGGuuUgGUGUUUa---AGG- -5'
33288 3' -52.8 NC_007605.1 + 142123 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 142021 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 142225 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5'
33288 3' -52.8 NC_007605.1 + 142735 0.67 0.972848
Target:  5'- aGGGCCggaaCCCCGGACCcggcuGCAGccggCCa -3'
miRNA:   3'- cCCCGGac--GGGGUUUGG-----UGUUuaa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.