miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 5' -55.7 NC_007605.1 + 1954 0.68 0.841724
Target:  5'- ---aGGcCUCAGcgUCAGGagaGGGCCAGa -3'
miRNA:   3'- uguaUC-GAGUCuaGGUCCg--UCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 3164 0.68 0.816247
Target:  5'- ---gGGCUCGGAgaaaUgGGGCcGGCCAGg -3'
miRNA:   3'- uguaUCGAGUCUa---GgUCCGuCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 6199 0.68 0.841724
Target:  5'- ---gGGCUCGGA---AGGCAGGCgGGg -3'
miRNA:   3'- uguaUCGAGUCUaggUCCGUCCGgUC- -5'
33288 5' -55.7 NC_007605.1 + 13474 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 16543 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 19612 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 22681 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 25750 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 28819 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 31888 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 34957 0.66 0.906969
Target:  5'- gGC-UGGCcuggUGGAcCCGGGgAGGCCAGa -3'
miRNA:   3'- -UGuAUCGa---GUCUaGGUCCgUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 40063 0.66 0.900631
Target:  5'- cCAgaggAGCccCAGAaCCAGGCAaGCCGGg -3'
miRNA:   3'- uGUa---UCGa-GUCUaGGUCCGUcCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 40143 0.66 0.900631
Target:  5'- ---cAGC-CGGcaAUCCAGGCguaccGGGCCAGc -3'
miRNA:   3'- uguaUCGaGUC--UAGGUCCG-----UCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 42858 0.69 0.779923
Target:  5'- uAC-UGGCUCAGuUCCccGCAGGCCc- -3'
miRNA:   3'- -UGuAUCGAGUCuAGGucCGUCCGGuc -5'
33288 5' -55.7 NC_007605.1 + 46509 0.66 0.887245
Target:  5'- uCAUuGCUCGGAUUguGGCAG-CCGa -3'
miRNA:   3'- uGUAuCGAGUCUAGguCCGUCcGGUc -5'
33288 5' -55.7 NC_007605.1 + 47814 1.07 0.003559
Target:  5'- cACAUAGCUCAGAUCCAGGCAGGCCAGc -3'
miRNA:   3'- -UGUAUCGAGUCUAGGUCCGUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 50446 0.66 0.918921
Target:  5'- uGCAUuccGGCUCGGAgCCuGGCGcgcGGCCc- -3'
miRNA:   3'- -UGUA---UCGAGUCUaGGuCCGU---CCGGuc -5'
33288 5' -55.7 NC_007605.1 + 53768 0.66 0.918921
Target:  5'- cGCAgauGCccCGGAUCCAcuuGGCGGcuGCCAGg -3'
miRNA:   3'- -UGUau-CGa-GUCUAGGU---CCGUC--CGGUC- -5'
33288 5' -55.7 NC_007605.1 + 56597 0.69 0.760912
Target:  5'- uCGUGGC-CAGGgacggCAGGCAGGCCu- -3'
miRNA:   3'- uGUAUCGaGUCUag---GUCCGUCCGGuc -5'
33288 5' -55.7 NC_007605.1 + 61936 0.66 0.894055
Target:  5'- ---aAGC-CGGAgCCGGGCggcgucaaAGGCCAGg -3'
miRNA:   3'- uguaUCGaGUCUaGGUCCG--------UCCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.