miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33288 5' -55.7 NC_007605.1 + 110310 0.77 0.347279
Target:  5'- aGCcgAGCgacugCAGAUCCAGGCgaaGGGCCGu -3'
miRNA:   3'- -UGuaUCGa----GUCUAGGUCCG---UCCGGUc -5'
33288 5' -55.7 NC_007605.1 + 6199 0.68 0.841724
Target:  5'- ---gGGCUCGGA---AGGCAGGCgGGg -3'
miRNA:   3'- uguaUCGAGUCUaggUCCGUCCGgUC- -5'
33288 5' -55.7 NC_007605.1 + 135067 0.67 0.872938
Target:  5'- gACcUGGCUCAGGUCCGGcgcccugcGCAGuCCAa -3'
miRNA:   3'- -UGuAUCGAGUCUAGGUC--------CGUCcGGUc -5'
33288 5' -55.7 NC_007605.1 + 46509 0.66 0.887245
Target:  5'- uCAUuGCUCGGAUUguGGCAG-CCGa -3'
miRNA:   3'- uGUAuCGAGUCUAGguCCGUCcGGUc -5'
33288 5' -55.7 NC_007605.1 + 61936 0.66 0.894055
Target:  5'- ---aAGC-CGGAgCCGGGCggcgucaaAGGCCAGg -3'
miRNA:   3'- uguaUCGaGUCUaGGUCCG--------UCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 92066 0.66 0.900631
Target:  5'- cACGUAGCUCcucuGUCC-GGCGuGGCUGGa -3'
miRNA:   3'- -UGUAUCGAGuc--UAGGuCCGU-CCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 160614 0.66 0.913066
Target:  5'- ---cAGCUCGG--CCA-GCAGGCCGGc -3'
miRNA:   3'- uguaUCGAGUCuaGGUcCGUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 53768 0.66 0.918921
Target:  5'- cGCAgauGCccCGGAUCCAcuuGGCGGcuGCCAGg -3'
miRNA:   3'- -UGUau-CGa-GUCUAGGU---CCGUC--CGGUC- -5'
33288 5' -55.7 NC_007605.1 + 119502 0.66 0.918921
Target:  5'- cGCAUAccucGCUCuucAUCCAGGaggGGGCCAu -3'
miRNA:   3'- -UGUAU----CGAGuc-UAGGUCCg--UCCGGUc -5'
33288 5' -55.7 NC_007605.1 + 1954 0.68 0.841724
Target:  5'- ---aGGcCUCAGcgUCAGGagaGGGCCAGa -3'
miRNA:   3'- uguaUC-GAGUCuaGGUCCg--UCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 3164 0.68 0.816247
Target:  5'- ---gGGCUCGGAgaaaUgGGGCcGGCCAGg -3'
miRNA:   3'- uguaUCGAGUCUa---GgUCCGuCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 132386 0.71 0.62934
Target:  5'- gACAUuuucGC-CAGccgCCGGGCGGGCCGGc -3'
miRNA:   3'- -UGUAu---CGaGUCua-GGUCCGUCCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 166789 0.7 0.701381
Target:  5'- cCGUAGa--AGAgCCGGGCAGGCCGc -3'
miRNA:   3'- uGUAUCgagUCUaGGUCCGUCCGGUc -5'
33288 5' -55.7 NC_007605.1 + 154128 0.7 0.741434
Target:  5'- --uUGGCgCGGAUCCucGCAGGCCGc -3'
miRNA:   3'- uguAUCGaGUCUAGGucCGUCCGGUc -5'
33288 5' -55.7 NC_007605.1 + 63588 0.69 0.751226
Target:  5'- cGCGUGGCUC---UCC-GGCGGcGCCGGg -3'
miRNA:   3'- -UGUAUCGAGucuAGGuCCGUC-CGGUC- -5'
33288 5' -55.7 NC_007605.1 + 134823 0.69 0.760912
Target:  5'- cCAU-GCUCAGggCCAcGGCGuGCCAGa -3'
miRNA:   3'- uGUAuCGAGUCuaGGU-CCGUcCGGUC- -5'
33288 5' -55.7 NC_007605.1 + 56597 0.69 0.760912
Target:  5'- uCGUGGC-CAGGgacggCAGGCAGGCCu- -3'
miRNA:   3'- uGUAUCGaGUCUag---GUCCGUCCGGuc -5'
33288 5' -55.7 NC_007605.1 + 63306 0.69 0.760912
Target:  5'- -uGUAGCcgccCGGGUCgAGGCAGGUgGGg -3'
miRNA:   3'- ugUAUCGa---GUCUAGgUCCGUCCGgUC- -5'
33288 5' -55.7 NC_007605.1 + 112433 0.69 0.779923
Target:  5'- ----uGCUCGGGcgugUCCuGGCAGGCCu- -3'
miRNA:   3'- uguauCGAGUCU----AGGuCCGUCCGGuc -5'
33288 5' -55.7 NC_007605.1 + 50446 0.66 0.918921
Target:  5'- uGCAUuccGGCUCGGAgCCuGGCGcgcGGCCc- -3'
miRNA:   3'- -UGUA---UCGAGUCUaGGuCCGU---CCGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.