miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33289 3' -61.4 NC_007605.1 + 12922 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 13363 0.66 0.697741
Target:  5'- gGGuCUCGgUGGgGcuGGACUugaGGGCCCAa -3'
miRNA:   3'- -UC-GAGCgACCgCacUCUGA---CCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 13769 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 14028 0.66 0.678179
Target:  5'- gGGCa-GUggacaggGGCGggagGGGGCUGGGCCUc -3'
miRNA:   3'- -UCGagCGa------CCGCa---CUCUGACCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 15991 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 16432 0.66 0.697741
Target:  5'- gGGuCUCGgUGGgGcuGGACUugaGGGCCCAa -3'
miRNA:   3'- -UC-GAGCgACCgCacUCUGA---CCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 16838 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 17097 0.66 0.678179
Target:  5'- gGGCa-GUggacaggGGCGggagGGGGCUGGGCCUc -3'
miRNA:   3'- -UCGagCGa------CCGCa---CUCUGACCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 19060 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 19501 0.66 0.697741
Target:  5'- gGGuCUCGgUGGgGcuGGACUugaGGGCCCAa -3'
miRNA:   3'- -UC-GAGCgACCgCacUCUGA---CCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 19907 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 20165 0.66 0.678179
Target:  5'- gGGCa-GUggacaggGGCGggagGGGGCUGGGCCUc -3'
miRNA:   3'- -UCGagCGa------CCGCa---CUCUGACCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 22128 0.68 0.559919
Target:  5'- cGGCUgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAgCGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 22570 0.66 0.697741
Target:  5'- gGGuCUCGgUGGgGcuGGACUugaGGGCCCAa -3'
miRNA:   3'- -UC-GAGCgACCgCacUCUGA---CCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 22976 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 23234 0.66 0.678179
Target:  5'- gGGCa-GUggacaggGGCGggagGGGGCUGGGCCUc -3'
miRNA:   3'- -UCGagCGa------CCGCa---CUCUGACCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 25197 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 25639 0.66 0.697741
Target:  5'- gGGuCUCGgUGGgGcuGGACUugaGGGCCCAa -3'
miRNA:   3'- -UC-GAGCgACCgCacUCUGA---CCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 26045 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 26303 0.66 0.678179
Target:  5'- gGGCa-GUggacaggGGCGggagGGGGCUGGGCCUc -3'
miRNA:   3'- -UCGagCGa------CCGCa---CUCUGACCCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.