miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33289 3' -61.4 NC_007605.1 + 60192 0.73 0.313412
Target:  5'- gGGCUCGCUGGUGU------GGGCCCAg -3'
miRNA:   3'- -UCGAGCGACCGCAcucugaCCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 155666 0.7 0.465857
Target:  5'- aGGCgCGCUGGCGUaGAaguaGGCUGcuGCCCAa -3'
miRNA:   3'- -UCGaGCGACCGCA-CU----CUGACc-CGGGU- -5'
33289 3' -61.4 NC_007605.1 + 140631 0.69 0.52526
Target:  5'- gAGCUCGggGGCGgccGGGuggcccaccggguccGCUGGGUCCGc -3'
miRNA:   3'- -UCGAGCgaCCGCa--CUC---------------UGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 52961 0.67 0.62879
Target:  5'- uAGCUUGggGGCGUccGGCUGGGgUCAg -3'
miRNA:   3'- -UCGAGCgaCCGCAcuCUGACCCgGGU- -5'
33289 3' -61.4 NC_007605.1 + 74668 0.67 0.62879
Target:  5'- cGGaC-CGCUGGCGagccGAGAuagauCUGGGCCUg -3'
miRNA:   3'- -UC-GaGCGACCGCa---CUCU-----GACCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 50789 0.66 0.687982
Target:  5'- aGGCUUGU--GUGUccuGGGGCUGGaGCCCAa -3'
miRNA:   3'- -UCGAGCGacCGCA---CUCUGACC-CGGGU- -5'
33289 3' -61.4 NC_007605.1 + 34404 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 32182 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 31335 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 28266 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 26045 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 25197 0.68 0.559919
Target:  5'- cGGCUCgGCUGGCc-GAGACccGGGUCUg -3'
miRNA:   3'- -UCGAG-CGACCGcaCUCUGa-CCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 35251 0.68 0.559919
Target:  5'- cGUggGgaGGgGUggacGAGGCUGGGCCCGg -3'
miRNA:   3'- uCGagCgaCCgCA----CUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 95094 0.68 0.530984
Target:  5'- gGGCUCGCgggauggGGcCG-GAGGCaGGGCCgAa -3'
miRNA:   3'- -UCGAGCGa------CC-GCaCUCUGaCCCGGgU- -5'
33289 3' -61.4 NC_007605.1 + 144616 0.69 0.521458
Target:  5'- aGGCUCccaaGGCG-GGGGUUGGGCCCAg -3'
miRNA:   3'- -UCGAGcga-CCGCaCUCUGACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 35503 0.69 0.484067
Target:  5'- cAGCUUG--GGCGagagGGGGCUGGGCCUc -3'
miRNA:   3'- -UCGAGCgaCCGCa---CUCUGACCCGGGu -5'
33289 3' -61.4 NC_007605.1 + 55064 0.69 0.484067
Target:  5'- gAGCgCGgaGGCGaaUGAGGcCUGGGCCa- -3'
miRNA:   3'- -UCGaGCgaCCGC--ACUCU-GACCCGGgu -5'
33289 3' -61.4 NC_007605.1 + 41271 0.7 0.465857
Target:  5'- cGGggUGCUGGgGUGGGGgaUGGGCUCAg -3'
miRNA:   3'- -UCgaGCGACCgCACUCUg-ACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 144087 0.7 0.465857
Target:  5'- cGGggUGCUGGgGUGGGGgaUGGGCUCAg -3'
miRNA:   3'- -UCgaGCGACCgCACUCUg-ACCCGGGU- -5'
33289 3' -61.4 NC_007605.1 + 13363 0.66 0.697741
Target:  5'- gGGuCUCGgUGGgGcuGGACUugaGGGCCCAa -3'
miRNA:   3'- -UC-GAGCgACCgCacUCUGA---CCCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.