miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33290 3' -62 NC_007605.1 + 48628 1.06 0.001685
Target:  5'- uCCUCCCCUACGCCCCCGCCCGUCUUUc -3'
miRNA:   3'- -GGAGGGGAUGCGGGGGCGGGCAGAAA- -5'
33290 3' -62 NC_007605.1 + 100742 0.75 0.2282
Target:  5'- gUUCCCCgcgcggcACGCCCCUGCCCGgcagUCUUg -3'
miRNA:   3'- gGAGGGGa------UGCGGGGGCGGGC----AGAAa -5'
33290 3' -62 NC_007605.1 + 66580 0.73 0.292971
Target:  5'- cCCUCCCCUGgGCCCuuGCUCaugauGUCa-- -3'
miRNA:   3'- -GGAGGGGAUgCGGGggCGGG-----CAGaaa -5'
33290 3' -62 NC_007605.1 + 37415 0.73 0.319852
Target:  5'- cCCUgCCCCUGCcccuGCCCCUGCCCcUCc-- -3'
miRNA:   3'- -GGA-GGGGAUG----CGGGGGCGGGcAGaaa -5'
33290 3' -62 NC_007605.1 + 154662 0.72 0.3412
Target:  5'- gCCgagCCgCCUGCGCCCCUcgggGCCCGUg--- -3'
miRNA:   3'- -GGa--GG-GGAUGCGGGGG----CGGGCAgaaa -5'
33290 3' -62 NC_007605.1 + 117597 0.72 0.363558
Target:  5'- cCCUCCCCUGCGCCUUCGUgCa----- -3'
miRNA:   3'- -GGAGGGGAUGCGGGGGCGgGcagaaa -5'
33290 3' -62 NC_007605.1 + 169409 0.72 0.363558
Target:  5'- aCCUCCCaacguUGCGCgCCCCGCgCC-UCUUUg -3'
miRNA:   3'- -GGAGGGg----AUGCG-GGGGCG-GGcAGAAA- -5'
33290 3' -62 NC_007605.1 + 40017 0.71 0.411233
Target:  5'- cCCUCCCCcaggGCGUgCCCCGCuuGcCUg- -3'
miRNA:   3'- -GGAGGGGa---UGCG-GGGGCGggCaGAaa -5'
33290 3' -62 NC_007605.1 + 44405 0.7 0.427965
Target:  5'- cUCUCCCCcggGCgcuGCCUUCGCCUGUCUc- -3'
miRNA:   3'- -GGAGGGGa--UG---CGGGGGCGGGCAGAaa -5'
33290 3' -62 NC_007605.1 + 60765 0.7 0.453798
Target:  5'- --cCCCCagGgGCCCCCGCCC-UCUUc -3'
miRNA:   3'- ggaGGGGa-UgCGGGGGCGGGcAGAAa -5'
33290 3' -62 NC_007605.1 + 47810 0.7 0.453798
Target:  5'- cCCUgaCCCUcGCGCCCCaucuugGCCCGUCc-- -3'
miRNA:   3'- -GGAg-GGGA-UGCGGGGg-----CGGGCAGaaa -5'
33290 3' -62 NC_007605.1 + 54038 0.69 0.480455
Target:  5'- gCUCCCCUcgaggcCGCCCUgGCCCGg---- -3'
miRNA:   3'- gGAGGGGAu-----GCGGGGgCGGGCagaaa -5'
33290 3' -62 NC_007605.1 + 51335 0.69 0.48951
Target:  5'- gCUCCCCUuuuCCCCCugGUCCGUCUc- -3'
miRNA:   3'- gGAGGGGAugcGGGGG--CGGGCAGAaa -5'
33290 3' -62 NC_007605.1 + 50860 0.69 0.506929
Target:  5'- gCCUCCCCacggccgucgggcUGCGaCCCCgugCGCCCGUg--- -3'
miRNA:   3'- -GGAGGGG-------------AUGC-GGGG---GCGGGCAgaaa -5'
33290 3' -62 NC_007605.1 + 160024 0.69 0.517133
Target:  5'- cCCUCCUCUGgGCCgCCCGgCCuCGcCUUc -3'
miRNA:   3'- -GGAGGGGAUgCGG-GGGC-GG-GCaGAAa -5'
33290 3' -62 NC_007605.1 + 154103 0.69 0.526481
Target:  5'- cCCUCCCCggACGCCUgggCGCCCcUCa-- -3'
miRNA:   3'- -GGAGGGGa-UGCGGGg--GCGGGcAGaaa -5'
33290 3' -62 NC_007605.1 + 59874 0.68 0.545359
Target:  5'- cCCUCaCCCgugggacaaACGCCCCCGCCauUCc-- -3'
miRNA:   3'- -GGAG-GGGa--------UGCGGGGGCGGgcAGaaa -5'
33290 3' -62 NC_007605.1 + 61428 0.68 0.55488
Target:  5'- cCCUCCCCUGuaaGCCCCCccuacucCCCGg---- -3'
miRNA:   3'- -GGAGGGGAUg--CGGGGGc------GGGCagaaa -5'
33290 3' -62 NC_007605.1 + 81873 0.68 0.55488
Target:  5'- gCCUCCa--ACGCUCCCGCgCgCGUCUa- -3'
miRNA:   3'- -GGAGGggaUGCGGGGGCG-G-GCAGAaa -5'
33290 3' -62 NC_007605.1 + 32828 0.68 0.56445
Target:  5'- aCCUCuCCCUA-GCCCuCCGCCCc----- -3'
miRNA:   3'- -GGAG-GGGAUgCGGG-GGCGGGcagaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.