miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33290 3' -62 NC_007605.1 + 159548 0.66 0.680904
Target:  5'- gCCUCCuCCU-CGCCUCgGCCCa----- -3'
miRNA:   3'- -GGAGG-GGAuGCGGGGgCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 26690 0.68 0.56445
Target:  5'- aCCUCuCCCUA-GCCCuCCGCCCc----- -3'
miRNA:   3'- -GGAG-GGGAUgCGGG-GGCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 29759 0.68 0.56445
Target:  5'- aCCUCuCCCUA-GCCCuCCGCCCc----- -3'
miRNA:   3'- -GGAG-GGGAUgCGGG-GGCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 32828 0.68 0.56445
Target:  5'- aCCUCuCCCUA-GCCCuCCGCCCc----- -3'
miRNA:   3'- -GGAG-GGGAUgCGGG-GGCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 81381 0.68 0.574062
Target:  5'- gCC-CCaCCUACGCCCuuGCCCc----- -3'
miRNA:   3'- -GGaGG-GGAUGCGGGggCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 154725 0.67 0.611855
Target:  5'- uCCUCCuUCUugGCCCCCaguagguGCCUGgCUa- -3'
miRNA:   3'- -GGAGG-GGAugCGGGGG-------CGGGCaGAaa -5'
33290 3' -62 NC_007605.1 + 94996 0.67 0.642061
Target:  5'- aCCUCCCCUGCuguuCCCCCaguuuGCCCcaUCg-- -3'
miRNA:   3'- -GGAGGGGAUGc---GGGGG-----CGGGc-AGaaa -5'
33290 3' -62 NC_007605.1 + 134574 0.67 0.642061
Target:  5'- --gCCCUgggGCGCCCCuCGCCCaugCUUg -3'
miRNA:   3'- ggaGGGGa--UGCGGGG-GCGGGca-GAAa -5'
33290 3' -62 NC_007605.1 + 62122 0.66 0.661525
Target:  5'- cUCUCCCCcgcCGgCCCCGCCCc----- -3'
miRNA:   3'- -GGAGGGGau-GCgGGGGCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 23621 0.68 0.56445
Target:  5'- aCCUCuCCCUA-GCCCuCCGCCCc----- -3'
miRNA:   3'- -GGAG-GGGAUgCGGG-GGCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 20552 0.68 0.56445
Target:  5'- aCCUCuCCCUA-GCCCuCCGCCCc----- -3'
miRNA:   3'- -GGAG-GGGAUgCGGG-GGCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 17483 0.68 0.56445
Target:  5'- aCCUCuCCCUA-GCCCuCCGCCCc----- -3'
miRNA:   3'- -GGAG-GGGAUgCGGG-GGCGGGcagaaa -5'
33290 3' -62 NC_007605.1 + 154662 0.72 0.3412
Target:  5'- gCCgagCCgCCUGCGCCCCUcgggGCCCGUg--- -3'
miRNA:   3'- -GGa--GG-GGAUGCGGGGG----CGGGCAgaaa -5'
33290 3' -62 NC_007605.1 + 117597 0.72 0.363558
Target:  5'- cCCUCCCCUGCGCCUUCGUgCa----- -3'
miRNA:   3'- -GGAGGGGAUGCGGGGGCGgGcagaaa -5'
33290 3' -62 NC_007605.1 + 40017 0.71 0.411233
Target:  5'- cCCUCCCCcaggGCGUgCCCCGCuuGcCUg- -3'
miRNA:   3'- -GGAGGGGa---UGCG-GGGGCGggCaGAaa -5'
33290 3' -62 NC_007605.1 + 60765 0.7 0.453798
Target:  5'- --cCCCCagGgGCCCCCGCCC-UCUUc -3'
miRNA:   3'- ggaGGGGa-UgCGGGGGCGGGcAGAAa -5'
33290 3' -62 NC_007605.1 + 47810 0.7 0.453798
Target:  5'- cCCUgaCCCUcGCGCCCCaucuugGCCCGUCc-- -3'
miRNA:   3'- -GGAg-GGGA-UGCGGGGg-----CGGGCAGaaa -5'
33290 3' -62 NC_007605.1 + 51335 0.69 0.48951
Target:  5'- gCUCCCCUuuuCCCCCugGUCCGUCUc- -3'
miRNA:   3'- gGAGGGGAugcGGGGG--CGGGCAGAaa -5'
33290 3' -62 NC_007605.1 + 160024 0.69 0.517133
Target:  5'- cCCUCCUCUGgGCCgCCCGgCCuCGcCUUc -3'
miRNA:   3'- -GGAGGGGAUgCGG-GGGC-GG-GCaGAAa -5'
33290 3' -62 NC_007605.1 + 14414 0.68 0.56445
Target:  5'- aCCUCuCCCUA-GCCCuCCGCCCc----- -3'
miRNA:   3'- -GGAG-GGGAUgCGGG-GGCGGGcagaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.