miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33291 3' -59.2 NC_007605.1 + 39717 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 39592 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 39342 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 39217 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 38843 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 38968 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 38468 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 38718 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 38593 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 39467 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 51006 0.7 0.517562
Target:  5'- -gGCAucuuuaacgacuuuUGGGCuCCAGCCCCAGgaCACAc -3'
miRNA:   3'- caCGU--------------ACUCGuGGUCGGGGUCg-GUGU- -5'
33291 3' -59.2 NC_007605.1 + 162956 0.7 0.520477
Target:  5'- cUGCGaGGGC-CgGGCCCCGGCCGu- -3'
miRNA:   3'- cACGUaCUCGuGgUCGGGGUCGGUgu -5'
33291 3' -59.2 NC_007605.1 + 73683 0.7 0.530241
Target:  5'- -cGCAUgGAGCccCCGGCCCCAuaCACGu -3'
miRNA:   3'- caCGUA-CUCGu-GGUCGGGGUcgGUGU- -5'
33291 3' -59.2 NC_007605.1 + 136497 0.7 0.540071
Target:  5'- -gGCcgGAGCGgUcGCCCCGGCCGg- -3'
miRNA:   3'- caCGuaCUCGUgGuCGGGGUCGGUgu -5'
33291 3' -59.2 NC_007605.1 + 60499 0.69 0.549962
Target:  5'- uGUGCcgGGaCGCCgccgccaggugGGCCCUGGCCACGg -3'
miRNA:   3'- -CACGuaCUcGUGG-----------UCGGGGUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 21949 0.69 0.559908
Target:  5'- -aGCc-GAGCgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG-UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 159036 0.69 0.578935
Target:  5'- cUGCGccGGGCGgacgcggUCAGCCCCGGCCAg- -3'
miRNA:   3'- cACGUa-CUCGU-------GGUCGGGGUCGGUgu -5'
33291 3' -59.2 NC_007605.1 + 50613 0.69 0.579941
Target:  5'- -aGCgGUGGGUGCCAGgCCCgugccaaaGGCCACGg -3'
miRNA:   3'- caCG-UACUCGUGGUCgGGG--------UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 159320 0.69 0.590016
Target:  5'- -cGCAUGcGgGCCAGCuCCCAGuagaCCACGu -3'
miRNA:   3'- caCGUACuCgUGGUCG-GGGUC----GGUGU- -5'
33291 3' -59.2 NC_007605.1 + 51552 0.68 0.609237
Target:  5'- -gGguUGAGUacaucggucgGCCaucgugaGGCCCCGGCCGCGu -3'
miRNA:   3'- caCguACUCG----------UGG-------UCGGGGUCGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.