miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33291 3' -59.2 NC_007605.1 + 49609 1.07 0.001646
Target:  5'- uGUGCAUGAGCACCAGCCCCAGCCACAc -3'
miRNA:   3'- -CACGUACUCGUGGUCGGGGUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 39967 0.79 0.156468
Target:  5'- gGUGCAgugGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- -CACGUa--CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 34958 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 31890 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 28821 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 25752 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 22683 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 19614 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 16545 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 13476 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 148986 0.74 0.301313
Target:  5'- -aGCGUGAGCGCgCAGCCCU-GCCGu- -3'
miRNA:   3'- caCGUACUCGUG-GUCGGGGuCGGUgu -5'
33291 3' -59.2 NC_007605.1 + 100319 0.74 0.30829
Target:  5'- aUGCccGAGUACUGGCuccCCCGGCCGCAa -3'
miRNA:   3'- cACGuaCUCGUGGUCG---GGGUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 62384 0.74 0.329957
Target:  5'- cUGCA-GGGCAgggUCAGCCCaCGGCCGCGg -3'
miRNA:   3'- cACGUaCUCGU---GGUCGGG-GUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 70802 0.72 0.410048
Target:  5'- -aGCAuaUGcGGCAgUAGCCCCAGCCuACAu -3'
miRNA:   3'- caCGU--AC-UCGUgGUCGGGGUCGG-UGU- -5'
33291 3' -59.2 NC_007605.1 + 73400 0.72 0.427458
Target:  5'- -cGCGcGAGCuccACCAGCUCCcgGGCCACGu -3'
miRNA:   3'- caCGUaCUCG---UGGUCGGGG--UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 39092 0.71 0.436326
Target:  5'- cUGCcccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua--CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 81452 0.71 0.436326
Target:  5'- -gGCGUGuGCACCAguacccGCCCCGGCUg-- -3'
miRNA:   3'- caCGUACuCGUGGU------CGGGGUCGGugu -5'
33291 3' -59.2 NC_007605.1 + 101813 0.71 0.463547
Target:  5'- -gGCAaGAGCACCAGCgUUAGCUGCc -3'
miRNA:   3'- caCGUaCUCGUGGUCGgGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 105850 0.71 0.463547
Target:  5'- -gGCGUaGAGC-CCGcCCCCGGCCAUAc -3'
miRNA:   3'- caCGUA-CUCGuGGUcGGGGUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 39842 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.