miRNA display CGI


Results 1 - 20 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33291 3' -59.2 NC_007605.1 + 24429 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 136497 0.7 0.540071
Target:  5'- -gGCcgGAGCGgUcGCCCCGGCCGg- -3'
miRNA:   3'- caCGuaCUCGUgGuCGGGGUCGGUgu -5'
33291 3' -59.2 NC_007605.1 + 21949 0.69 0.559908
Target:  5'- -aGCc-GAGCgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG-UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 159320 0.69 0.590016
Target:  5'- -cGCAUGcGgGCCAGCuCCCAGuagaCCACGu -3'
miRNA:   3'- caCGUACuCgUGGUCG-GGGUC----GGUGU- -5'
33291 3' -59.2 NC_007605.1 + 51552 0.68 0.609237
Target:  5'- -gGguUGAGUacaucggucgGCCaucgugaGGCCCCGGCCGCGu -3'
miRNA:   3'- caCguACUCG----------UGG-------UCGGGGUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 12153 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 15222 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 18291 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 21360 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 105850 0.71 0.463547
Target:  5'- -gGCGUaGAGC-CCGcCCCCGGCCAUAc -3'
miRNA:   3'- caCGUA-CUCGuGGUcGGGGUCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 81452 0.71 0.436326
Target:  5'- -gGCGUGuGCACCAguacccGCCCCGGCUg-- -3'
miRNA:   3'- caCGUACuCGUGGU------CGGGGUCGGugu -5'
33291 3' -59.2 NC_007605.1 + 73400 0.72 0.427458
Target:  5'- -cGCGcGAGCuccACCAGCUCCcgGGCCACGu -3'
miRNA:   3'- caCGUaCUCG---UGGUCGGGG--UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 16545 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 19614 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 22683 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 25752 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 28821 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 31890 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 34958 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 148986 0.74 0.301313
Target:  5'- -aGCGUGAGCGCgCAGCCCU-GCCGu- -3'
miRNA:   3'- caCGUACUCGUG-GUCGGGGuCGGUgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.