miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33291 3' -59.2 NC_007605.1 + 1930 0.68 0.659972
Target:  5'- cUGCGUG-GCACCaacaacgaucccaGGCCUCAGCguCAg -3'
miRNA:   3'- cACGUACuCGUGG-------------UCGGGGUCGguGU- -5'
33291 3' -59.2 NC_007605.1 + 2595 0.67 0.721008
Target:  5'- cUGUuuAUGAGaCGCCAGCacCCCGGCCu-- -3'
miRNA:   3'- cACG--UACUC-GUGGUCG--GGGUCGGugu -5'
33291 3' -59.2 NC_007605.1 + 12153 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 12742 0.67 0.671096
Target:  5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 13476 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 15222 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 15811 0.67 0.671096
Target:  5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 16545 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 18291 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 18880 0.67 0.671096
Target:  5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 19614 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 21360 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 21949 0.69 0.559908
Target:  5'- -aGCc-GAGCgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG-UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 22683 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 24429 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 25017 0.67 0.671096
Target:  5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 25752 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 27498 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 28086 0.67 0.671096
Target:  5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 28821 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.