miRNA display CGI


Results 21 - 40 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33291 3' -59.2 NC_007605.1 + 30567 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 31155 0.67 0.671096
Target:  5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 31890 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 33636 0.68 0.61025
Target:  5'- cUGCAcccAGUACCuGCCCCucuuGGCCACGc -3'
miRNA:   3'- cACGUac-UCGUGGuCGGGG----UCGGUGU- -5'
33291 3' -59.2 NC_007605.1 + 33919 0.67 0.691215
Target:  5'- -gGC-UGGGCugGCCGGCCCgGGUCugGg -3'
miRNA:   3'- caCGuACUCG--UGGUCGGGgUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 34224 0.67 0.671096
Target:  5'- -aGCc-GAGCcgACCGGCCCCGcGCCugGc -3'
miRNA:   3'- caCGuaCUCG--UGGUCGGGGU-CGGugU- -5'
33291 3' -59.2 NC_007605.1 + 34958 0.75 0.287726
Target:  5'- -gGCAaGGGCGCCAGCuuuucucccCCCAGCCugAg -3'
miRNA:   3'- caCGUaCUCGUGGUCG---------GGGUCGGugU- -5'
33291 3' -59.2 NC_007605.1 + 38468 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 38593 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 38718 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 38843 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 38968 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 39092 0.71 0.436326
Target:  5'- cUGCcccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua--CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 39217 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 39342 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 39467 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 39592 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 39717 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 39842 0.71 0.48218
Target:  5'- cUGCccccgGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- cACGua---CUCGUGGUC---GGGGUCGGUGu -5'
33291 3' -59.2 NC_007605.1 + 39967 0.79 0.156468
Target:  5'- gGUGCAgugGAGCGCCAGgaaCCCCGGCUGCc -3'
miRNA:   3'- -CACGUa--CUCGUGGUC---GGGGUCGGUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.