miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33292 3' -58.9 NC_007605.1 + 27605 0.68 0.665356
Target:  5'- gGAGGcuggGGUGGCAGGAGGGgaGcAgCa- -3'
miRNA:   3'- -CUCCa---CCACUGUCCUCCCgaC-UgGag -5'
33292 3' -58.9 NC_007605.1 + 29167 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 29374 0.7 0.555251
Target:  5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3'
miRNA:   3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 29435 0.66 0.807949
Target:  5'- cAGGccUGGUGACAGGGcGcGCaUGGCCUg -3'
miRNA:   3'- cUCC--ACCACUGUCCUcC-CG-ACUGGAg -5'
33292 3' -58.9 NC_007605.1 + 30674 0.68 0.665356
Target:  5'- gGAGGcuggGGUGGCAGGAGGGgaGcAgCa- -3'
miRNA:   3'- -CUCCa---CCACUGUCCUCCCgaC-UgGag -5'
33292 3' -58.9 NC_007605.1 + 32236 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 32443 0.7 0.555251
Target:  5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3'
miRNA:   3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 32504 0.66 0.807949
Target:  5'- cAGGccUGGUGACAGGGcGcGCaUGGCCUg -3'
miRNA:   3'- cUCC--ACCACUGUCCUcC-CG-ACUGGAg -5'
33292 3' -58.9 NC_007605.1 + 33743 0.68 0.665356
Target:  5'- gGAGGcuggGGUGGCAGGAGGGgaGcAgCa- -3'
miRNA:   3'- -CUCCa---CCACUGUCCUCCCgaC-UgGag -5'
33292 3' -58.9 NC_007605.1 + 35115 0.69 0.645274
Target:  5'- uGGGcGGcuGCAGGGGGGCUGACa-- -3'
miRNA:   3'- cUCCaCCacUGUCCUCCCGACUGgag -5'
33292 3' -58.9 NC_007605.1 + 35305 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 36562 0.67 0.743972
Target:  5'- gGGGGUGGUGGUGGGGGGGgUGGu--- -3'
miRNA:   3'- -CUCCACCACUGUCCUCCCgACUggag -5'
33292 3' -58.9 NC_007605.1 + 36975 0.66 0.790316
Target:  5'- cAGGUGGcagaggGGUAGGAGGGgUaGGCCUUg -3'
miRNA:   3'- cUCCACCa-----CUGUCCUCCCgA-CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 37243 0.66 0.815686
Target:  5'- -uGGUGGUGGCaauugugAGGGGGGUaaUGGCa-- -3'
miRNA:   3'- cuCCACCACUG-------UCCUCCCG--ACUGgag -5'
33292 3' -58.9 NC_007605.1 + 50136 0.97 0.010412
Target:  5'- gGAGGUGGUGACAGGAGGGUcGACCUCc -3'
miRNA:   3'- -CUCCACCACUGUCCUCCCGaCUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 50684 0.7 0.545421
Target:  5'- gGAGGcgGGUGGC-GGAGGGCcGaAUCUCc -3'
miRNA:   3'- -CUCCa-CCACUGuCCUCCCGaC-UGGAG- -5'
33292 3' -58.9 NC_007605.1 + 51283 0.69 0.635214
Target:  5'- aGAGG-GGgcucugugGGCuGGGAGGGCcagaGGCCUCa -3'
miRNA:   3'- -CUCCaCCa-------CUG-UCCUCCCGa---CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 51448 0.67 0.734384
Target:  5'- aAGGUGGccccUGGCAGGcccAGGGaCUGGCUg- -3'
miRNA:   3'- cUCCACC----ACUGUCC---UCCC-GACUGGag -5'
33292 3' -58.9 NC_007605.1 + 57868 0.69 0.615095
Target:  5'- -uGGUGGagGACAGaGGGGGCggcGGCCg- -3'
miRNA:   3'- cuCCACCa-CUGUC-CUCCCGa--CUGGag -5'
33292 3' -58.9 NC_007605.1 + 58023 0.66 0.772132
Target:  5'- cGGGGaUGGggaugaaGAgGGGAGGGCUGgagGCCg- -3'
miRNA:   3'- -CUCC-ACCa------CUgUCCUCCCGAC---UGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.