miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33292 3' -58.9 NC_007605.1 + 12260 0.68 0.665356
Target:  5'- gGAGGcuggGGUGGCAGGAGGGgaGcAgCa- -3'
miRNA:   3'- -CUCCa---CCACUGUCCUCCCgaC-UgGag -5'
33292 3' -58.9 NC_007605.1 + 13823 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 14030 0.7 0.555251
Target:  5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3'
miRNA:   3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 14091 0.66 0.807949
Target:  5'- cAGGccUGGUGACAGGGcGcGCaUGGCCUg -3'
miRNA:   3'- cUCC--ACCACUGUCCUcC-CG-ACUGGAg -5'
33292 3' -58.9 NC_007605.1 + 15329 0.68 0.665356
Target:  5'- gGAGGcuggGGUGGCAGGAGGGgaGcAgCa- -3'
miRNA:   3'- -CUCCa---CCACUGUCCUCCCgaC-UgGag -5'
33292 3' -58.9 NC_007605.1 + 16892 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 17099 0.7 0.555251
Target:  5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3'
miRNA:   3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 17159 0.71 0.497222
Target:  5'- cAGGccUGGUGACAGGGcgcgcauGGCUGAgCCUCu -3'
miRNA:   3'- cUCC--ACCACUGUCCUc------CCGACU-GGAG- -5'
33292 3' -58.9 NC_007605.1 + 18398 0.68 0.665356
Target:  5'- gGAGGcuggGGUGGCAGGAGGGgaGcAgCa- -3'
miRNA:   3'- -CUCCa---CCACUGUCCUCCCgaC-UgGag -5'
33292 3' -58.9 NC_007605.1 + 19961 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 20167 0.7 0.555251
Target:  5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3'
miRNA:   3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 20228 0.66 0.807949
Target:  5'- cAGGccUGGUGACAGGGcGcGCaUGGCCUg -3'
miRNA:   3'- cUCC--ACCACUGUCCUcC-CG-ACUGGAg -5'
33292 3' -58.9 NC_007605.1 + 21467 0.68 0.665356
Target:  5'- gGAGGcuggGGUGGCAGGAGGGgaGcAgCa- -3'
miRNA:   3'- -CUCCa---CCACUGUCCUCCCgaC-UgGag -5'
33292 3' -58.9 NC_007605.1 + 23030 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 23236 0.7 0.555251
Target:  5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3'
miRNA:   3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 23297 0.66 0.807949
Target:  5'- cAGGccUGGUGACAGGGcGcGCaUGGCCUg -3'
miRNA:   3'- cUCC--ACCACUGUCCUcC-CG-ACUGGAg -5'
33292 3' -58.9 NC_007605.1 + 24536 0.68 0.665356
Target:  5'- gGAGGcuggGGUGGCAGGAGGGgaGcAgCa- -3'
miRNA:   3'- -CUCCa---CCACUGUCCUCCCgaC-UgGag -5'
33292 3' -58.9 NC_007605.1 + 26099 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 26305 0.7 0.555251
Target:  5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3'
miRNA:   3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 26366 0.66 0.807949
Target:  5'- cAGGccUGGUGACAGGGcGcGCaUGGCCUg -3'
miRNA:   3'- cUCC--ACCACUGUCCUcC-CG-ACUGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.