miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33292 3' -58.9 NC_007605.1 + 59578 0.78 0.2007
Target:  5'- -cGGUGGUGACAGGucccGGCUGGCC-Cg -3'
miRNA:   3'- cuCCACCACUGUCCuc--CCGACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 91392 0.66 0.811403
Target:  5'- gGGGGUGGgagccaaagaggcaGGCAGGGGccGGUUGGCC-Ca -3'
miRNA:   3'- -CUCCACCa-------------CUGUCCUC--CCGACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 63099 0.66 0.799205
Target:  5'- cGGG-GGUGGCAguGGAGGGggGAgCUUCa -3'
miRNA:   3'- cUCCaCCACUGU--CCUCCCgaCU-GGAG- -5'
33292 3' -58.9 NC_007605.1 + 166754 0.66 0.781288
Target:  5'- uGGGUccucGG-GGCAGGGGuGGCUaGGCCUg -3'
miRNA:   3'- cUCCA----CCaCUGUCCUC-CCGA-CUGGAg -5'
33292 3' -58.9 NC_007605.1 + 58023 0.66 0.772132
Target:  5'- cGGGGaUGGggaugaaGAgGGGAGGGCUGgagGCCg- -3'
miRNA:   3'- -CUCC-ACCa------CUgUCCUCCCGAC---UGGag -5'
33292 3' -58.9 NC_007605.1 + 63610 0.67 0.713982
Target:  5'- gGGGGUGGcgGugGaguaugcuucgucGGGGGGCUgGGCCUg -3'
miRNA:   3'- -CUCCACCa-CugU-------------CCUCCCGA-CUGGAg -5'
33292 3' -58.9 NC_007605.1 + 158605 0.69 0.635214
Target:  5'- --cGUGGUGGCGGGGGGuGCgGGCUg- -3'
miRNA:   3'- cucCACCACUGUCCUCC-CGaCUGGag -5'
33292 3' -58.9 NC_007605.1 + 51283 0.69 0.635214
Target:  5'- aGAGG-GGgcucugugGGCuGGGAGGGCcagaGGCCUCa -3'
miRNA:   3'- -CUCCaCCa-------CUG-UCCUCCCGa---CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 158805 0.69 0.635214
Target:  5'- uGAGGUaaagcccauccGGgGGCAGGgccuggccGGGGCUGACCg- -3'
miRNA:   3'- -CUCCA-----------CCaCUGUCC--------UCCCGACUGGag -5'
33292 3' -58.9 NC_007605.1 + 153551 0.69 0.625152
Target:  5'- -cGGUGG-GAgAGGA-GGCUGGCCg- -3'
miRNA:   3'- cuCCACCaCUgUCCUcCCGACUGGag -5'
33292 3' -58.9 NC_007605.1 + 57868 0.69 0.615095
Target:  5'- -uGGUGGagGACAGaGGGGGCggcGGCCg- -3'
miRNA:   3'- cuCCACCa-CUGUC-CUCCCGa--CUGGag -5'
33292 3' -58.9 NC_007605.1 + 50684 0.7 0.545421
Target:  5'- gGAGGcgGGUGGC-GGAGGGCcGaAUCUCc -3'
miRNA:   3'- -CUCCa-CCACUGuCCUCCCGaC-UGGAG- -5'
33292 3' -58.9 NC_007605.1 + 64713 0.71 0.497222
Target:  5'- uAGG-GGUGAC-GG-GGGCUGGCCa- -3'
miRNA:   3'- cUCCaCCACUGuCCuCCCGACUGGag -5'
33292 3' -58.9 NC_007605.1 + 19961 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 23030 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 26099 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 29167 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 32236 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 35305 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 125574 0.66 0.816538
Target:  5'- gGAGGUGGgcagcgugGuCAGGGuGGGCagagGACCa- -3'
miRNA:   3'- -CUCCACCa-------CuGUCCU-CCCGa---CUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.