miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33292 3' -58.9 NC_007605.1 + 50136 0.97 0.010412
Target:  5'- gGAGGUGGUGACAGGAGGGUcGACCUCc -3'
miRNA:   3'- -CUCCACCACUGUCCUCCCGaCUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 59578 0.78 0.2007
Target:  5'- -cGGUGGUGACAGGucccGGCUGGCC-Cg -3'
miRNA:   3'- cuCCACCACUGUCCuc--CCGACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 13823 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 35305 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 32236 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 29167 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 26099 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 23030 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 19961 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 16892 0.72 0.451031
Target:  5'- uGGGGUGGacACAGGGGGGCggggaUGGCC-Cg -3'
miRNA:   3'- -CUCCACCacUGUCCUCCCG-----ACUGGaG- -5'
33292 3' -58.9 NC_007605.1 + 17159 0.71 0.497222
Target:  5'- cAGGccUGGUGACAGGGcgcgcauGGCUGAgCCUCu -3'
miRNA:   3'- cUCC--ACCACUGUCCUc------CCGACU-GGAG- -5'
33292 3' -58.9 NC_007605.1 + 64713 0.71 0.497222
Target:  5'- uAGG-GGUGAC-GG-GGGCUGGCCa- -3'
miRNA:   3'- cUCCaCCACUGuCCuCCCGACUGGag -5'
33292 3' -58.9 NC_007605.1 + 50684 0.7 0.545421
Target:  5'- gGAGGcgGGUGGC-GGAGGGCcGaAUCUCc -3'
miRNA:   3'- -CUCCa-CCACUGuCCUCCCGaC-UGGAG- -5'
33292 3' -58.9 NC_007605.1 + 29374 0.7 0.555251
Target:  5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3'
miRNA:   3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 14030 0.7 0.555251
Target:  5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3'
miRNA:   3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 20167 0.7 0.555251
Target:  5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3'
miRNA:   3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 17099 0.7 0.555251
Target:  5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3'
miRNA:   3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 23236 0.7 0.555251
Target:  5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3'
miRNA:   3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 26305 0.7 0.555251
Target:  5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3'
miRNA:   3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5'
33292 3' -58.9 NC_007605.1 + 32443 0.7 0.555251
Target:  5'- cGGGGcagUGGacaggGGCGGGAggGGGCUgGGCCUCa -3'
miRNA:   3'- -CUCC---ACCa----CUGUCCU--CCCGA-CUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.