miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33292 5' -61.5 NC_007605.1 + 65458 0.68 0.558859
Target:  5'- gUGGUGGcCUgCUCCauucuucagGGAUCCCCCacuuaugauUCCa -3'
miRNA:   3'- -AUCACCaGGgGAGG---------CCUAGGGGG---------AGG- -5'
33292 5' -61.5 NC_007605.1 + 168979 0.68 0.558859
Target:  5'- ---cGGcCCCCUCgaGGAccCCCCCUCUc -3'
miRNA:   3'- aucaCCaGGGGAGg-CCUa-GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 35288 0.68 0.607248
Target:  5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCUc -3'
miRNA:   3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 159670 0.68 0.607248
Target:  5'- ---cGG-CCCgUCCGGcgCCCUCUCg -3'
miRNA:   3'- aucaCCaGGGgAGGCCuaGGGGGAGg -5'
33292 5' -61.5 NC_007605.1 + 15672 0.67 0.617001
Target:  5'- ---cGGcCCCaCUCCGGGcgCCUCCUCg -3'
miRNA:   3'- aucaCCaGGG-GAGGCCUa-GGGGGAGg -5'
33292 5' -61.5 NC_007605.1 + 34086 0.67 0.617001
Target:  5'- ---cGGcCCCaCUCCGGGcgCCUCCUCg -3'
miRNA:   3'- aucaCCaGGG-GAGGCCUa-GGGGGAGg -5'
33292 5' -61.5 NC_007605.1 + 31017 0.67 0.617001
Target:  5'- ---cGGcCCCaCUCCGGGcgCCUCCUCg -3'
miRNA:   3'- aucaCCaGGG-GAGGCCUa-GGGGGAGg -5'
33292 5' -61.5 NC_007605.1 + 27948 0.67 0.617001
Target:  5'- ---cGGcCCCaCUCCGGGcgCCUCCUCg -3'
miRNA:   3'- aucaCCaGGG-GAGGCCUa-GGGGGAGg -5'
33292 5' -61.5 NC_007605.1 + 24879 0.67 0.617001
Target:  5'- ---cGGcCCCaCUCCGGGcgCCUCCUCg -3'
miRNA:   3'- aucaCCaGGG-GAGGCCUa-GGGGGAGg -5'
33292 5' -61.5 NC_007605.1 + 18741 0.67 0.617001
Target:  5'- ---cGGcCCCaCUCCGGGcgCCUCCUCg -3'
miRNA:   3'- aucaCCaGGG-GAGGCCUa-GGGGGAGg -5'
33292 5' -61.5 NC_007605.1 + 21810 0.67 0.617001
Target:  5'- ---cGGcCCCaCUCCGGGcgCCUCCUCg -3'
miRNA:   3'- aucaCCaGGG-GAGGCCUa-GGGGGAGg -5'
33292 5' -61.5 NC_007605.1 + 12603 0.67 0.617001
Target:  5'- ---cGGcCCCaCUCCGGGcgCCUCCUCg -3'
miRNA:   3'- aucaCCaGGG-GAGGCCUa-GGGGGAGg -5'
33292 5' -61.5 NC_007605.1 + 96739 0.67 0.617001
Target:  5'- ---gGGUCUCCaCCGcGcaggCCCCCUCCa -3'
miRNA:   3'- aucaCCAGGGGaGGC-Cua--GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 31607 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 28538 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 25469 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 34676 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 19331 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 13193 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5'
33292 5' -61.5 NC_007605.1 + 22400 0.67 0.626765
Target:  5'- gAGUGGcccggaUCCCCccaCCGGcccuucucucuGUCCCCCUgCu -3'
miRNA:   3'- aUCACC------AGGGGa--GGCC-----------UAGGGGGAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.