miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33292 5' -61.5 NC_007605.1 + 50102 1.09 0.00113
Target:  5'- cUAGUGGUCCCCUCCGGAUCCCCCUCCu -3'
miRNA:   3'- -AUCACCAGGGGAGGCCUAGGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 163024 0.77 0.190462
Target:  5'- ---aGGUCCCCUCCugcaGGGUCCCCaggCCg -3'
miRNA:   3'- aucaCCAGGGGAGG----CCUAGGGGga-GG- -5'
33292 5' -61.5 NC_007605.1 + 19944 0.71 0.422782
Target:  5'- cAGgGGUCCCCga-GGGUaggcccagCCCCCUCCc -3'
miRNA:   3'- aUCaCCAGGGGaggCCUA--------GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 116112 0.71 0.422782
Target:  5'- gAGUGG---CCUCgGGAcCCCCCUCCu -3'
miRNA:   3'- aUCACCaggGGAGgCCUaGGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 13806 0.71 0.431255
Target:  5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3'
miRNA:   3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 32219 0.71 0.431255
Target:  5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3'
miRNA:   3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 29150 0.71 0.431255
Target:  5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3'
miRNA:   3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 26081 0.71 0.431255
Target:  5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3'
miRNA:   3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 23012 0.71 0.431255
Target:  5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3'
miRNA:   3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 16875 0.71 0.431255
Target:  5'- cAGgGGUCCCCga-GGGUgaggcccagCCCCCUCCc -3'
miRNA:   3'- aUCaCCAGGGGaggCCUA---------GGGGGAGG- -5'
33292 5' -61.5 NC_007605.1 + 39815 0.7 0.457252
Target:  5'- -cGUGGUCCCCUggaccccagccCCGccGAUCCCuCCcCCa -3'
miRNA:   3'- auCACCAGGGGA-----------GGC--CUAGGG-GGaGG- -5'
33292 5' -61.5 NC_007605.1 + 33395 0.7 0.493173
Target:  5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3'
miRNA:   3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5'
33292 5' -61.5 NC_007605.1 + 30326 0.7 0.493173
Target:  5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3'
miRNA:   3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5'
33292 5' -61.5 NC_007605.1 + 27257 0.7 0.493173
Target:  5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3'
miRNA:   3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5'
33292 5' -61.5 NC_007605.1 + 24188 0.7 0.493173
Target:  5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3'
miRNA:   3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5'
33292 5' -61.5 NC_007605.1 + 21119 0.7 0.493173
Target:  5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3'
miRNA:   3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5'
33292 5' -61.5 NC_007605.1 + 14981 0.7 0.493173
Target:  5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3'
miRNA:   3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5'
33292 5' -61.5 NC_007605.1 + 18050 0.7 0.493173
Target:  5'- ---aGGcCCCCUCCG--UCCCCgUCCu -3'
miRNA:   3'- aucaCCaGGGGAGGCcuAGGGGgAGG- -5'
33292 5' -61.5 NC_007605.1 + 142685 0.69 0.546439
Target:  5'- gGGUGG-CCCa-CCGGGuccgcuggguccgcUCCCCgCUCCg -3'
miRNA:   3'- aUCACCaGGGgaGGCCU--------------AGGGG-GAGG- -5'
33292 5' -61.5 NC_007605.1 + 51330 0.68 0.557901
Target:  5'- gUAGUGcUCCCCUuuuccccCUGGuccGUCuCCCCUCCu -3'
miRNA:   3'- -AUCACcAGGGGA-------GGCC---UAG-GGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.